6YWE

The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	23S rRNA	polymer	3464	1114857.4	1		Neurospora crassa
2	e	60S ribosomal protein L1, mitochondrial	polymer	303	33327.7	1	UniProt (Q870V5) Pfam (PF00687) In PDB	Neurospora crassa	Related to ribosomal protein L1
3	B	60S ribosomal protein L2, mitochondrial	polymer	383	42260.8	1	UniProt (A0A0B0DJN7) In PDB	Neurospora crassa
4	C	Related to ribosomal protein L3, mitochondrial	polymer	384	41262.5	1	UniProt (Q873B3) Pfam (PF00297) In PDB	Neurospora crassa	Translation protein
5	D	60S ribosomal protein L4, variant	polymer	325	36402.8	1	UniProt (V5IMN1) Pfam (PF00573) In PDB	Neurospora crassa
6	E	Related to ribosomal protein L5, mitochondrial	polymer	352	39170.9	1	UniProt (Q96U12) Pfam (PF00673) In PDB	Neurospora crassa	Ribosomal protein L5
7	F	uL6m	polymer	255	28629.2	1	UniProt (A0A0B0DQR9) In PDB	Neurospora crassa
8	G	RIBOSOMAL_L9 domain-containing protein	polymer	300	33173.2	1	UniProt (A0A0B0DK80) In PDB	Neurospora crassa
9	f	Related to ribosomal protein YmL11, mitochondrial	polymer	347	37363.8	1	UniProt (Q6M9C4) In PDB	Neurospora crassa
10	g	uL11m	polymer	158	16629.4	1	UniProt (A0A0B0DNH1) In PDB	Neurospora crassa
11	H	uL13m	polymer	183	20334.6	1	UniProt (A0A0B0E388) In PDB	Neurospora crassa
12	I	Ribosomal protein L14	polymer	131	14135.6	1	UniProt (A0A0B0E7L9) In PDB	Neurospora crassa
13	J	Ribosomal protein L15	polymer	312	33951.1	1	UniProt (A0A0B0DM93) In PDB	Neurospora crassa
14	K	Related to ribosomal protein L16, mitochondrial	polymer	249	27443.8	1	UniProt (Q8X081) Pfam (PF00252) In PDB	Neurospora crassa	Ribosomal protein L16
15	L	uL17m	polymer	193	22181.5	1	UniProt (A0A0B0ECK1) In PDB	Neurospora crassa
16	M	bL19m	polymer	258	28235.3	1	UniProt (A0A0B0DXI2) In PDB	Neurospora crassa
17	N	Related to ribosomal protein YmL49, mitochondrial	polymer	217	23953.0	1	UniProt (Q6MVF2) Pfam (PF00829) In PDB	Neurospora crassa
18	O	Mitochondrial large ribosomal subunit	polymer	364	41566.0	1	UniProt (Q7S5N0) Pfam (PF00237) In PDB	Neurospora crassa
19	P	uL23m	polymer	228	26005.5	1	UniProt (A0A0B0DT83) In PDB	Neurospora crassa
20	Q	KOW domain-containing protein	polymer	396	45460.1	1	UniProt (A0A0B0DQ90) In PDB	Neurospora crassa
21	R	Related to 60s ribosomal protein L2 (Mitochondrial)	polymer	447	49549.2	1	UniProt (Q8X0Q2) Pfam (PF01016) In PDB	Neurospora crassa
22	S	bL28m	polymer	274	31501.1	1	UniProt (A0A0B0DNQ5) In PDB	Neurospora crassa
23	T	54S ribosomal protein L4, mitochondrial	polymer	263	29645.3	1	UniProt (A0A0B0DW15) In PDB	Neurospora crassa
24	U	Related to ribosomal protein L30	polymer	161	18196.4	1	UniProt (Q8X098) Pfam (PF00327) In PDB	Neurospora crassa
25	V	Related to ribosomal protein YmL36, mitochondrial	polymer	219	23766.7	1	UniProt (Q9C2E5) Pfam (PF21492) In PDB	Neurospora crassa
26	W	Related to ribosomal protein YmL32 (Mitochondrial),Mitochondrial ribosomal protein subunit L32	polymer	129	14114.8	1	UniProt (Q9HFL0) UniProt (Q1K4P1) Pfam (PF01783) In PDB	Neurospora crassa
27	X	bL33m	polymer	59	7027.6	1	UniProt (A0A0B0E6P7) In PDB	Neurospora crassa
28	Y	Related to ribosomal protein L34, mitochondrial	polymer	140	14853.3	1	UniProt (Q96U95) Pfam (PF00468) In PDB	Neurospora crassa
29	0	Ribosomal protein	polymer	124	13960.4	1	UniProt (Q7S4E7) Pfam (PF00444) In PDB	Neurospora crassa
30	1	PEBP-like protein	polymer	449	50749.2	1	UniProt (A0A0B0DZ96) In PDB	Neurospora crassa
31	2	mL40	polymer	370	41496.3	1	UniProt (A0A0B0DWX0) In PDB	Neurospora crassa
32	3	mL41	polymer	103	11796.6	1	UniProt (A0A0B0E3D2) In PDB	Neurospora crassa
33	4	L51_S25_CI-B8 domain-containing protein	polymer	138	15126.7	1	UniProt (A0A0B0DUU4) In PDB	Neurospora crassa
34	5	Ribonuclease III	polymer	439	48106.5	1	UniProt (A0A0B0DPP2) In PDB	Neurospora crassa
35	6	MRP-L46 domain-containing protein	polymer	368	41322.1	1	UniProt (A0A0B0DTN8) In PDB	Neurospora crassa
36	7	mL49	polymer	165	18180.7	1	UniProt (Q7S518) Pfam (PF05046) In PDB	Neurospora crassa
37	8	mL50	polymer	443	49748.5	1	UniProt (Q7S711) Pfam (PF10501) In PDB	Neurospora crassa
38	h	Probable ribosomal protein YmL44, mitochondrial	polymer	98	11128.8	1	UniProt (Q6MVH6) Pfam (PF10780) In PDB	Neurospora crassa
39	i	mL54	polymer	218	23179.6	1	UniProt (A0A0B0E0Q5) In PDB	Neurospora crassa
40	9	RNase III domain-containing protein	polymer	267	29625.2	1	UniProt (A0A0B0E462) In PDB	Neurospora crassa
41	a	Related to ribosomal protein YmL20, mitochondrial	polymer	225	25439.0	1	UniProt (Q8NIR6) Pfam (PF12824) In PDB	Neurospora crassa
42	b	Mitoc_mL59 domain-containing protein	polymer	162	18745.0	1	UniProt (A0A0B0DMU6) In PDB	Neurospora crassa
43	c	54S ribosomal protein L31, mitochondrial	polymer	110	13131.5	1	UniProt (A0A0B0EF55) In PDB	Neurospora crassa
44	d	mL67	polymer	292	32516.1	1	UniProt (A0A0B0ECJ7) In PDB	Neurospora crassa
45	j	L51_S25_CI-B8 domain-containing protein	polymer	201	22734.3	1	UniProt (Q7RWZ7) Pfam (PF05047) In PDB	Neurospora crassa
46	bb	tRNA P/E state	polymer	74	23710.1	1		Neurospora crassa
47	AA	bS1m	polymer	470	51596.3	1	UniProt (A0A0B0DJR9) In PDB	Neurospora crassa
48	BB	Mito ribosomal protein S2	polymer	428	47197.3	1	UniProt (V5ILE0) Pfam (PF00318) In PDB	Neurospora crassa
49	CC	Ribosomal protein S5	polymer	508	58907.3	1	UniProt (A0A1W5YJW8) In PDB	Neurospora crassa
50	DD	S4 RNA-binding domain-containing protein	polymer	453	51610.0	1	UniProt (A0A0B0DXP8) In PDB	Neurospora crassa
51	EE	Related to ribosomal protein S5 (Mitochondrial)	polymer	477	53297.5	1	UniProt (Q8X048) Pfam (PF00333) Pfam (PF03719) In PDB	Neurospora crassa
52	FF	Ribosomal protein S6	polymer	117	13304.4	1	UniProt (A0A0B0DP65) In PDB	Neurospora crassa
53	GG	Ribosomal_S7 domain-containing protein	polymer	309	33821.9	1	UniProt (A0A0B0E7P2) In PDB	Neurospora crassa
54	HH	uS8m	polymer	161	17743.7	1	UniProt (A0A0B0EEW5) In PDB	Neurospora crassa
55	II	uS9m	polymer	315	35319.6	1	UniProt (A0A0B0ED13) In PDB	Neurospora crassa
56	JJ	30S ribosomal protein S10, mitochondrial	polymer	268	30377.1	1	UniProt (A0A0B0EAU9) In PDB	Neurospora crassa
57	KK	Translational machinery component	polymer	376	42159.8	1	UniProt (A0A0B0DQD8) In PDB	Neurospora crassa
58	LL	Ribosomal protein S12	polymer	174	18657.9	1	UniProt (A0A0B0DQD0) In PDB	Neurospora crassa
59	MM	Probable ribosomal protein S13	polymer	119	13503.8	1	UniProt (Q6MVY0) Pfam (PF00416) In PDB	Neurospora crassa	Putative ribosomal protein S13
60	NN	Mitochondrial 37S ribosomal protein MRP2	polymer	113	13210.6	1	UniProt (A0A0B0DHJ1) In PDB	Neurospora crassa
61	OO	Related to ribosomal protein S15 (Mitochondrial)	polymer	320	35804.0	1	UniProt (Q8X067) Pfam (PF00312) In PDB	Neurospora crassa
62	PP	bS16m	polymer	107	12140.2	1	UniProt (A0A0B0DKS9) In PDB	Neurospora crassa
63	QQ	uS17m	polymer	165	18505.7	1	UniProt (A0A0B0DJ04) In PDB	Neurospora crassa
64	RR	Ribosomal protein S18	polymer	256	28468.6	1	UniProt (Q872A7) Pfam (PF01084) In PDB	Neurospora crassa
65	SS	Ribosomal protein S19/S15	polymer	91	10408.3	1	UniProt (A0A0B0DRW6) In PDB	Neurospora crassa
66	TT	bS21m	polymer	236	25679.8	1	UniProt (A0A0B0DTH5) In PDB	Neurospora crassa
67	UU	37S ribosomal protein S25, mitochondrial	polymer	253	29553.6	1	UniProt (Q873E4) Pfam (PF13741) In PDB	Neurospora crassa
68	VV	mS26	polymer	316	35312.2	1	UniProt (Q7SHR9) In PDB	Neurospora crassa
69	WW	mS27	polymer	396	44923.7	1	UniProt (Q7RYW7) In PDB	Neurospora crassa
70	XX	Mitochondrial ribosomal protein DAP3	polymer	469	51451.4	1	UniProt (Q7SD06) Pfam (PF10236) In PDB	Neurospora crassa
71	YY	mS33	polymer	108	12169.2	1	UniProt (A0A0B0DU00) In PDB	Neurospora crassa
72	ZZ	37S ribosomal protein S24, mitochondrial	polymer	382	44057.1	1	UniProt (Q9P5J2) Pfam (PF10213) In PDB	Neurospora crassa
73	11	37S ribosomal protein mrp10, mitochondrial	polymer	90	9907.5	1	UniProt (A0A0B0E339) In PDB	Neurospora crassa
74	22	DUF1713 domain-containing protein	polymer	344	38126.3	1	UniProt (Q7SHR6) Pfam (PF08213) In PDB	Neurospora crassa
75	33	Protein FYV4, mitochondrial	polymer	236	26612.9	1	UniProt (Q9HE52) Pfam (PF09597) In PDB	Neurospora crassa
76	44, 55	Manganese and iron superoxide dismutase	polymer	310	34270.8	2	UniProt (A0A0B0DM95) In PDB	Neurospora crassa
77	66	mS45	polymer	348	39274.6	1	UniProt (Q7SHB2) Pfam (PF12298) In PDB	Neurospora crassa
78	77	mS46	polymer	414	43112.7	1	UniProt (A0A0B0DYB0) In PDB	Neurospora crassa
79	88	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	polymer	508	56401.2	1	UniProt (Q9C251) Pfam (PF16113) In PDB	Neurospora crassa	3-hydroxyisobutyryl-coenzyme A hydrolase
80	00, 99	IF1	polymer	95	10664.1	2	UniProt (A0A0B0DIK4) In PDB	Neurospora crassa
81	aa	16S rRNA	polymer	1864	600339.4	1		Neurospora crassa
82	ee	mRNA	polymer	11	3454.1	1		Neurospora crassa
83	A, S, aa, 3, BB...	MAGNESIUM ION	non-polymer		24.3	242	Chemie (MG)
84	A	SPERMINE	non-polymer		202.3	1	Chemie (SPM)
85	A, 2, KK, aa, 77...	POTASSIUM ION	non-polymer		39.1	55	Chemie (K)
86	W, 0	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
87	2	NICOTINAMIDE-ADENINE-DINUCLEOTIDE	non-polymer		663.4	1	Chemie (NAD)
88	XX	ADENOSINE-5'-TRIPHOSPHATE	non-polymer		507.2	1	Chemie (ATP)

Sequence modifications

W: 1 - 122 (UniProt: Q9HFL0)
W: 123 - 129 (UniProt: Q1K4P1)

Contents of the asymmetric unit

Polymers	Number of chains	84
	Total formula weight	4121974.4
Non-Polymers*	Number of molecules	302
	Total formula weight	9536.0
All*	Total formula weight	4131510.4

*Water molecules are not included.