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6YPU

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(2, 4)
16S ribosomal RNApolymer1544500126.22GenBank (692328596)Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
2C
(c)
30S ribosomal protein S2polymer25027680.41UniProt (D0CC74)
Pfam (PF00318)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
3D
(e)
30S ribosomal protein S4polymer20823311.81UniProt (D0CD21)
Pfam (PF00163)
Pfam (PF01479)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
4E
(f)
30S ribosomal protein S5polymer16517181.81UniProt (D0CD14)
Pfam (PF00333)
Pfam (PF03719)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
5F
(g)
30S ribosomal protein S6polymer12714987.01UniProt (D0C5Z0)
Pfam (PF01250)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
6G
(i)
30S ribosomal protein S8polymer13114250.71UniProt (D0CD11)
Pfam (PF00410)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
7H
(l)
30S ribosomal protein S11polymer12813558.51UniProt (D0CD20)
Pfam (PF00411)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
8I
(m)
30S ribosomal protein S12polymer12413797.11UniProt (D0C9P6)
Pfam (PF00164)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
9J
(p)
30S ribosomal protein S15polymer8910145.61UniProt (D0CAU9)
Pfam (PF00312)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
10K
(q)
30S ribosomal protein S16polymer839215.51UniProt (D0CCR5)
Pfam (PF00886)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
11L
(r)
30S ribosomal protein S17polymer859543.11UniProt (D0CD06)
Pfam (PF00366)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
12M
(s)
30S ribosomal protein S18polymer759009.51UniProt (D0C5Y9)
Pfam (PF01084)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
13N
(u)
30S ribosomal protein S20polymer889723.41UniProt (D0C7N1)
Pfam (PF01649)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
14O
(v)
30S ribosomal protein S21polymer718474.01UniProt (D0C5Q3)
Pfam (PF01165)
Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
15AA, AB, BA, BB, CA...
(2, 4)
MAGNESIUM IONnon-polymer24.359Chemie (MG)
16WB
(4)
(2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamidenon-polymer585.61Chemie (AKN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains15
Total formula weight1181130.7
Non-Polymers*Number of molecules60
Total formula weight2019.6
All*Total formula weight1183150.3
*Water molecules are not included.

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PDB entries from 2024-10-30

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