Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6YPU

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Functional Information from GO Data

Chain	GOid	namespace	contents
c	0003735	molecular_function	structural constituent of ribosome
c	0005840	cellular_component	ribosome
c	0006412	biological_process	translation
c	0015935	cellular_component	small ribosomal subunit
c	0022627	cellular_component	cytosolic small ribosomal subunit
c	1990904	cellular_component	ribonucleoprotein complex
e	0003723	molecular_function	RNA binding
e	0003735	molecular_function	structural constituent of ribosome
e	0005840	cellular_component	ribosome
e	0006412	biological_process	translation
e	0015935	cellular_component	small ribosomal subunit
e	0019843	molecular_function	rRNA binding
e	0042274	biological_process	ribosomal small subunit biogenesis
e	1990904	cellular_component	ribonucleoprotein complex
f	0003723	molecular_function	RNA binding
f	0003735	molecular_function	structural constituent of ribosome
f	0005737	cellular_component	cytoplasm
f	0005840	cellular_component	ribosome
f	0006412	biological_process	translation
f	0015935	cellular_component	small ribosomal subunit
f	0019843	molecular_function	rRNA binding
f	0042254	biological_process	ribosome biogenesis
f	1990904	cellular_component	ribonucleoprotein complex
g	0003723	molecular_function	RNA binding
g	0003735	molecular_function	structural constituent of ribosome
g	0005737	cellular_component	cytoplasm
g	0005840	cellular_component	ribosome
g	0006412	biological_process	translation
g	0015935	cellular_component	small ribosomal subunit
g	0019843	molecular_function	rRNA binding
g	0022627	cellular_component	cytosolic small ribosomal subunit
g	0070181	molecular_function	small ribosomal subunit rRNA binding
g	1990904	cellular_component	ribonucleoprotein complex
i	0003723	molecular_function	RNA binding
i	0003735	molecular_function	structural constituent of ribosome
i	0005737	cellular_component	cytoplasm
i	0005840	cellular_component	ribosome
i	0006412	biological_process	translation
i	0019843	molecular_function	rRNA binding
i	1990904	cellular_component	ribonucleoprotein complex
l	0003723	molecular_function	RNA binding
l	0003735	molecular_function	structural constituent of ribosome
l	0005840	cellular_component	ribosome
l	0006412	biological_process	translation
l	0019843	molecular_function	rRNA binding
l	1990904	cellular_component	ribonucleoprotein complex
m	0000049	molecular_function	tRNA binding
m	0003723	molecular_function	RNA binding
m	0003735	molecular_function	structural constituent of ribosome
m	0005840	cellular_component	ribosome
m	0006412	biological_process	translation
m	0015935	cellular_component	small ribosomal subunit
m	0019843	molecular_function	rRNA binding
m	1990904	cellular_component	ribonucleoprotein complex
p	0003723	molecular_function	RNA binding
p	0003735	molecular_function	structural constituent of ribosome
p	0005737	cellular_component	cytoplasm
p	0005840	cellular_component	ribosome
p	0006412	biological_process	translation
p	0019843	molecular_function	rRNA binding
p	0022627	cellular_component	cytosolic small ribosomal subunit
p	1990904	cellular_component	ribonucleoprotein complex
q	0003735	molecular_function	structural constituent of ribosome
q	0005737	cellular_component	cytoplasm
q	0005840	cellular_component	ribosome
q	0006412	biological_process	translation
q	0015935	cellular_component	small ribosomal subunit
q	1990904	cellular_component	ribonucleoprotein complex
r	0003723	molecular_function	RNA binding
r	0003735	molecular_function	structural constituent of ribosome
r	0005840	cellular_component	ribosome
r	0006412	biological_process	translation
r	0019843	molecular_function	rRNA binding
r	0022627	cellular_component	cytosolic small ribosomal subunit
r	1990904	cellular_component	ribonucleoprotein complex
s	0003723	molecular_function	RNA binding
s	0003735	molecular_function	structural constituent of ribosome
s	0005840	cellular_component	ribosome
s	0006412	biological_process	translation
s	0019843	molecular_function	rRNA binding
s	0022627	cellular_component	cytosolic small ribosomal subunit
s	0070181	molecular_function	small ribosomal subunit rRNA binding
s	1990904	cellular_component	ribonucleoprotein complex
u	0003723	molecular_function	RNA binding
u	0003735	molecular_function	structural constituent of ribosome
u	0005829	cellular_component	cytosol
u	0005840	cellular_component	ribosome
u	0006412	biological_process	translation
u	0015935	cellular_component	small ribosomal subunit
u	0019843	molecular_function	rRNA binding
u	0070181	molecular_function	small ribosomal subunit rRNA binding
u	1990904	cellular_component	ribonucleoprotein complex
v	0003735	molecular_function	structural constituent of ribosome
v	0005840	cellular_component	ribosome
v	0006412	biological_process	translation
v	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	1
Details	binding site for residue MG 2 1601

Chain	Residue
2	G23

site_id	AC2
Number of Residues	3
Details	binding site for residue MG 2 1602

Chain	Residue
2	A112
2	G113
2	G285

site_id	AC3
Number of Residues	5
Details	binding site for residue MG 2 1603

Chain	Residue
2	U252
2	G253
2	G254
2	C264
2	U265

site_id	AC4
Number of Residues	1
Details	binding site for residue MG 2 1605

Chain	Residue
2	U252

site_id	AC5
Number of Residues	3
Details	binding site for residue MG 2 1606

Chain	Residue
2	G295
2	G555
2	U557

site_id	AC6
Number of Residues	1
Details	binding site for residue MG 2 1607

Chain	Residue
2	G320

site_id	AC7
Number of Residues	1
Details	binding site for residue MG 2 1608

Chain	Residue
2	C348

site_id	AC8
Number of Residues	1
Details	binding site for residue MG 2 1609

Chain	Residue
2	G358

site_id	AC9
Number of Residues	3
Details	binding site for residue MG 2 1610

Chain	Residue
2	G503
2	A506
2	A507

site_id	AD1
Number of Residues	1
Details	binding site for residue MG 2 1612

Chain	Residue
2	A544

site_id	AD2
Number of Residues	1
Details	binding site for residue MG 2 1613

Chain	Residue
2	U557

site_id	AD3
Number of Residues	1
Details	binding site for residue MG 2 1614

Chain	Residue
2	U575

site_id	AD4
Number of Residues	1
Details	binding site for residue MG 2 1615

Chain	Residue
2	G647

site_id	AD5
Number of Residues	1
Details	binding site for residue MG 2 1616

Chain	Residue
2	A605

site_id	AD6
Number of Residues	2
Details	binding site for residue MG 2 1618

Chain	Residue
2	A811
2	A813

site_id	AD7
Number of Residues	1
Details	binding site for residue MG 2 1619

Chain	Residue
2	G855

site_id	AD8
Number of Residues	1
Details	binding site for residue MG 2 1620

Chain	Residue
2	U888

site_id	AD9
Number of Residues	1
Details	binding site for residue MG 2 1621

Chain	Residue
2	A437

site_id	AE1
Number of Residues	2
Details	binding site for residue MG 2 1622

Chain	Residue
2	G738
2	G739

site_id	AE2
Number of Residues	1
Details	binding site for residue MG 2 1623

Chain	Residue
2	U96

site_id	AE3
Number of Residues	2
Details	binding site for residue MG 2 1624

Chain	Residue
2	A170
2	C171

site_id	AE4
Number of Residues	5
Details	binding site for residue MG 2 1625

Chain	Residue
2	G63
2	U64
2	G100
2	G101
u	GLN6

site_id	AE5
Number of Residues	2
Details	binding site for residue MG 2 1626

Chain	Residue
2	A105
2	G327

site_id	AE6
Number of Residues	3
Details	binding site for residue MG 2 1627

Chain	Residue
2	G111
2	G113
2	G285

site_id	AE7
Number of Residues	2
Details	binding site for residue MG 2 1629

Chain	Residue
2	C174
2	A191

site_id	AE8
Number of Residues	2
Details	binding site for residue MG 2 1630

Chain	Residue
2	G141
2	A193

site_id	AE9
Number of Residues	6
Details	binding site for residue MG 2 1631

Chain	Residue
2	G238
2	A239
2	U241
2	G277
2	A278
2	U279

site_id	AF1
Number of Residues	4
Details	binding site for residue MG 2 1632

Chain	Residue
2	G103
2	G320
2	A321
2	G322

site_id	AF2
Number of Residues	4
Details	binding site for residue MG 2 1634

Chain	Residue
2	C368
2	U371
2	G372
2	U383

site_id	AF3
Number of Residues	2
Details	binding site for residue MG 2 1636

Chain	Residue
2	U513
2	A530

site_id	AF4
Number of Residues	1
Details	binding site for residue MG 2 1637

Chain	Residue
2	C533

site_id	AF5
Number of Residues	1
Details	binding site for residue MG 2 1638

Chain	Residue
2	G567

site_id	AF6
Number of Residues	2
Details	binding site for residue MG 2 1639

Chain	Residue
2	A869
2	G871

site_id	AF7
Number of Residues	4
Details	binding site for residue MG 2 1640

Chain	Residue
2	U568
2	A569
2	A570
2	A571

site_id	AF8
Number of Residues	2
Details	binding site for residue MG 2 1641

Chain	Residue
2	G578
2	G755

site_id	AF9
Number of Residues	4
Details	binding site for residue MG 2 1642

Chain	Residue
2	A592
2	A593
2	G594
2	U595

site_id	AG1
Number of Residues	3
Details	binding site for residue MG 2 1645

Chain	Residue
2	U669
2	U714
2	G731

site_id	AG2
Number of Residues	2
Details	binding site for residue MG 2 1648

Chain	Residue
2	A756
2	G757

site_id	AG3
Number of Residues	4
Details	binding site for residue MG 2 1649

Chain	Residue
2	A779
2	A791
4	C1518
4	U1519

site_id	AG4
Number of Residues	4
Details	binding site for residue MG 2 1650

Chain	Residue
2	G832
2	G833
2	U847
2	U848

site_id	AG5
Number of Residues	3
Details	binding site for residue MG 2 1651

Chain	Residue
2	G829
2	G850
2	U851

site_id	AG6
Number of Residues	3
Details	binding site for residue MG 2 1652

Chain	Residue
2	U918
2	G919
4	U1390

site_id	AG7
Number of Residues	1
Details	binding site for residue MG 2 1653

Chain	Residue
2	C573

site_id	AG8
Number of Residues	4
Details	binding site for residue MG 4 1601

Chain	Residue
4	A1496
4	A1497
4	G1502
4	U1495

site_id	AG9
Number of Residues	3
Details	binding site for residue MG 4 1602

Chain	Residue
4	A1497
4	G1502
4	G1505

site_id	AH1
Number of Residues	5
Details	binding site for residue MG 4 1603

Chain	Residue
4	G1508
4	U1509
4	U1519
4	G1520
4	C1521

site_id	AH2
Number of Residues	2
Details	binding site for residue MG 4 1605

Chain	Residue
4	U1433
4	A1434

site_id	AH3
Number of Residues	4
Details	binding site for residue MG 4 1606

Chain	Residue
4	A1496
4	A1497
4	G1505
4	C1518

site_id	AH4
Number of Residues	12
Details	binding site for residue AKN 4 1607

Chain	Residue
4	C1401
4	G1402
4	C1404
4	A1405
4	G1488
4	A1489
4	A1490
4	G1491
4	U1492
4	C1493
4	G1494
4	U1495

Functional Information from PROSITE/UniProt

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaIVSTSkGIMtdraAR

Chain	Residue	Details
i	GLY101-ARG118

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. VrALgaV.GYkInsitDvTPiPHN

Chain	Residue	Details
l	VAL96-ASN118

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAmR

Chain	Residue	Details
m	LYS43-ARG50

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVtIkEsRPIS

Chain	Residue	Details
r	GLY57-SER69

site_id	PS00057
Number of Residues	24
Details	RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IdtLkqYITEn.GKIvpsRI

Chain	Residue	Details
s	ILE21-ILE44

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFkahKhDhhSrrgLirMvnqrrkLldY

Chain	Residue	Details
p	LEU39-TYR69

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGrgkar.EVpa.AI

Chain	Residue	Details
f	GLY27-ILE59

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRmgfGsTraeARqLV

Chain	Residue	Details
e	LEU96-VAL120

site_id	PS00732
Number of Residues	10
Details	RIBOSOMAL_S16 Ribosomal protein S16 signature. VvIRLARGGA

Chain	Residue	Details
q	VAL2-ALA11

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MrDLLQAGAHFG

Chain	Residue	Details
c	MET8-GLY19

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDvdhEaiaIkEaknlGIP

Chain	Residue	Details
c	PRO160-PRO184

site_id	PS01048
Number of Residues	10
Details	RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN

Chain	Residue	Details
g	GLY43-ASN52

site_id	PS01181
Number of Residues	13
Details	RIBOSOMAL_S21 Ribosomal protein S21 signature. DvAIRRFKRsceK

Chain	Residue	Details
v	ASP13-LYS25

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)