6YPT

X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, C (A, C)	RNA replicase polyprotein	polymer	160	17778.9	2	UniProt (P10358) Pfam (PF05381)	Turnip yellow mosaic virus	206 kDa polyprotein
2	B, D (B, D)	Polyubiquitin-C	polymer	85	9735.1	2	UniProt (P0CG48) Pfam (PF00240)	Homo sapiens (human)
3	E, F (A, C)	METHYL 4-AMINOBUTANOATE	non-polymer		117.1	2	Chemie (GVE)

Sequence modifications

A, C: 728 - 879 (UniProt: P10358)

PDB	External Database	Details
Met 720	-	initiating methionine
His 721	-	expression tag
His 722	-	expression tag
His 723	-	expression tag
His 724	-	expression tag
His 725	-	expression tag
His 726	-	expression tag
Gly 727	-	expression tag

B, D: 1 - 75 (UniProt: P0CG48)

PDB	External Database	Details
Met -9	-	initiating methionine
Tyr -8	-	expression tag
Pro -7	-	expression tag
Tyr -6	-	expression tag
Asp -5	-	expression tag
Val -4	-	expression tag
Pro -3	-	expression tag
Asp -2	-	expression tag
Tyr -1	-	expression tag
Ala 0	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	55028.0
Non-Polymers*	Number of molecules	2
	Total formula weight	234.3
All*	Total formula weight	55262.3

*Water molecules are not included.