6YPT
X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | RNA replicase polyprotein | polymer | 160 | 17778.9 | 2 | UniProt (P10358) Pfam (PF05381) In PDB | Turnip yellow mosaic virus | 206 kDa polyprotein |
2 | B, D | Polyubiquitin-C | polymer | 85 | 9735.1 | 2 | UniProt (P0CG48) Pfam (PF00240) In PDB | Homo sapiens (human) | |
3 | A, C | METHYL 4-AMINOBUTANOATE | non-polymer | 117.1 | 2 | Chemie (GVE) |
Sequence modifications
A, C: 728 - 879 (UniProt: P10358)
B, D: 1 - 75 (UniProt: P0CG48)
PDB | External Database | Details |
---|---|---|
Met 720 | - | initiating methionine |
His 721 | - | expression tag |
His 722 | - | expression tag |
His 723 | - | expression tag |
His 724 | - | expression tag |
His 725 | - | expression tag |
His 726 | - | expression tag |
Gly 727 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -9 | - | initiating methionine |
Tyr -8 | - | expression tag |
Pro -7 | - | expression tag |
Tyr -6 | - | expression tag |
Asp -5 | - | expression tag |
Val -4 | - | expression tag |
Pro -3 | - | expression tag |
Asp -2 | - | expression tag |
Tyr -1 | - | expression tag |
Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 55028.0 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 234.3 | |
All* | Total formula weight | 55262.3 |