6YPT
X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue GVE A 901 |
| Chain | Residue |
| A | LEU781 |
| A | CYS783 |
| A | LEU820 |
| A | SER868 |
| A | HIS869 |
| B | GLY75 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for Di-peptide GVE C 901 and GLY D 75 |
| Chain | Residue |
| C | GLY821 |
| C | LEU822 |
| C | SER868 |
| C | HIS869 |
| C | PHE870 |
| D | ARG74 |
| C | LEU781 |
| C | CYS783 |
| C | LEU820 |
| site_id | AC3 |
| Number of Residues | 11 |
| Details | binding site for Di-peptide GVE C 901 and CYS C 783 |
| Chain | Residue |
| C | LEU781 |
| C | ASN782 |
| C | LEU784 |
| C | LEU785 |
| C | SER786 |
| C | ALA787 |
| C | LEU820 |
| C | SER868 |
| C | HIS869 |
| C | PHE870 |
| D | GLY75 |
Functional Information from PROSITE/UniProt
| site_id | PS00299 |
| Number of Residues | 26 |
| Details | UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD |
| Chain | Residue | Details |
| B | LYS27-ASP52 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Motif: {"description":"GPP flap","evidences":[{"source":"PubMed","id":"29117247","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Active site: {"description":"For protease activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU01074","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"17686855","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23966860","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29117247","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Active site: {"description":"For protease activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU01074","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"23966860","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29117247","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
