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6YMS

Structural and Kinetic Evaluation of Phosphoramidate Inhibitors on Thermolysin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(E)
Thermolysinpolymer31634360.31UniProt (P43133)
Pfam (PF01447)
Pfam (PF02868)
Geobacillus stearothermophilus (Bacillus stearothermophilus)Neutral protease
2B, C, D, E
(E)
CALCIUM IONnon-polymer40.14Chemie (CA)
3F
(E)
ZINC IONnon-polymer65.41Chemie (ZN)
4G, H, I
(E)
DIMETHYL SULFOXIDEnon-polymer78.13Chemie (DMS)
5J
(E)
(2~{S})-4-methyl-2-[2-[[oxidanyl-[(1~{S})-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]amino]ethanoylamino]pentanoic acidnon-polymer505.51Chemie (OZH)
6K
(E)
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOLnon-polymer122.11Chemie (TRS)
7L
(E)
GLYCEROLnon-polymer92.11Chemie (GOL)
8M
(E)
waterwater18.0362Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight34360.3
Non-Polymers*Number of molecules11
Total formula weight1179.9
All*Total formula weight35540.2
*Water molecules are not included.

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PDB entries from 2025-07-16

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