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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6YJ4

Structure of Yarrowia lipolytica complex I at 2.7 A

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ANADH-ubiquinone oxidoreductase chain 3polymer12814506.31UniProt (S5TMS4)
Pfam (PF00507)
UniProt (by SIFTS) (Q9B6C7)
In PDB		Yarrowia lipolytica
2BSubunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer21023455.21UniProt (Q9UUT7)
Pfam (PF01058)
In PDB		Yarrowia lipolytica
3CNUGM proteinpolymer29333644.91UniProt (Q9UUU0)
Pfam (PF00329)
UniProt (by SIFTS) (F2Z6D7)
In PDB		Yarrowia lipolytica
4DNUCM proteinpolymer46652521.91UniProt (Q9UUU1)
Pfam (PF00346)
UniProt (by SIFTS) (F2Z626)
In PDB		Yarrowia lipolytica
5ESubunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer24327247.41UniProt (Q9UUT9)
Pfam (PF01257)
UniProt (by SIFTS) (F2Z6C0)
In PDB		Yarrowia lipolytica
6FSubunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer48853829.51UniProt (Q9UUU2)
Pfam (PF01512)
Pfam (PF10531)
Pfam (PF10589)
UniProt (by SIFTS) (F2Z660)
In PDB		Yarrowia lipolytica
7GSubunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer72879088.11UniProt (Q9UUU3)
Pfam (PF10588)
Pfam (PF00384)
Pfam (PF09326)
Pfam (PF13510)
UniProt (by SIFTS) (F2Z6F1)
In PDB		Yarrowia lipolytica
8HNADH-ubiquinone oxidoreductase chain 1polymer34138389.31UniProt (S5U3V2)
Pfam (PF00146)
UniProt (by SIFTS) (Q9B6E8)
In PDB		Yarrowia lipolytica
9ISubunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer22925682.31UniProt (Q9UUT8)
Pfam (PF12838)
UniProt (by SIFTS) (F2Z619)
In PDB		Yarrowia lipolytica
10JNADH-ubiquinone oxidoreductase chain 6polymer18520793.11UniProt (Q9B6E9)
Pfam (PF00499)
In PDB		Yarrowia lipolytica (strain CLIB 122 / E 150)NADH dehydrogenase subunit 6
11KNADH-ubiquinone oxidoreductase chain 4Lpolymer899843.91UniProt (S5U4U1)
Pfam (PF00420)
UniProt (by SIFTS) (Q9B6D4)
In PDB		Yarrowia lipolytica
12LNADH-ubiquinone oxidoreductase chain 5polymer65573768.71UniProt (S5TF58)
Pfam (PF00662)
Pfam (PF00361)
UniProt (by SIFTS) (Q9B6D3)
In PDB		Yarrowia lipolytica
13MNADH-ubiquinone oxidoreductase chain 4polymer48654534.71UniProt (S5TMP9)
Pfam (PF00361)
UniProt (by SIFTS) (Q9B6D6)
In PDB		Yarrowia lipolytica
14NNADH dehydrogenase subunit 2polymer46953381.41UniProt (S5U4R9)
Pfam (PF00361)
UniProt (by SIFTS) (Q9B6C8)
In PDB		Yarrowia lipolytica
15OSubunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer16918588.21UniProt (A0A1D8NKB4)
Pfam (PF10785)
Pfam (PF12853)
UniProt (by SIFTS) (Q6C4A6)
In PDB		Yarrowia lipolytica
16PSubunit NUEM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer37542765.71UniProt (A0A371BY45)
Pfam (PF01370)
UniProt (by SIFTS) (Q6C7X4)
In PDB		Yarrowia lipolytica
17QSubunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer16118656.11UniProt (A0A1D8N7X0)
Pfam (PF04800)
UniProt (by SIFTS) (Q6CEK9)
In PDB		Yarrowia lipolytica
18RSubunit NUMM of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer13615149.01UniProt (A0A1H6Q8Z5)
Pfam (PF10276)
UniProt (by SIFTS) (Q6C8J9)
In PDB		Yarrowia lipolytica
19SSubunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer879621.11UniProt (A0A1H6PJS3)
Pfam (PF05047)
UniProt (by SIFTS) (Q6CD73)
In PDB		Yarrowia lipolytica
20TAcyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I)polymer10912053.61UniProt (A0A1H6PXT9)
Pfam (PF00550)
UniProt (by SIFTS) (Q6C926)
In PDB		Yarrowia lipolytica
21UAcyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I)polymer13214444.51UniProt (A0A1D8NG21)
Pfam (PF00550)
UniProt (by SIFTS) (Q6C7X2)
In PDB		Yarrowia lipolytica
22VSubunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer14416657.91UniProt (A0A371C5F3)
Pfam (PF04716)
UniProt (by SIFTS) (Q6C4W9)
In PDB		Yarrowia lipolytica
23WSubunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer12414778.81UniProt (A0A1D8N3C8)
Pfam (PF13233)
UniProt (by SIFTS) (Q6CI60)
In PDB		Yarrowia lipolytica
24XSubunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer17219355.21UniProt (A0A371C2D0)
Pfam (PF06747)
UniProt (by SIFTS) (Q6CGB4)
In PDB		Yarrowia lipolytica
25YSubunit NUJM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer19820849.61UniProt (A0A371CB65)
UniProt (by SIFTS) (Q6C674)
In PDB		Yarrowia lipolytica
26ZSubunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer12314112.41UniProt (A0A1H6PPE5)
Pfam (PF06212)
UniProt (by SIFTS) (B5FVF8)
In PDB		Yarrowia lipolytica
27aSubunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer879806.21UniProt (A0A1D8NC63)
Pfam (PF15879)
UniProt (by SIFTS) (B5FVD3)
In PDB		Yarrowia lipolytica
28bsubunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer788992.21UniProt (A0A1D8NJR0)
UniProt (by SIFTS) (B5FVF3)
In PDB		Yarrowia lipolytica
29cSubunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer18219772.51UniProt (A0A1D8N3H5)
UniProt (by SIFTS) (Q6CI10)
In PDB		Yarrowia lipolytica
30dSubunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer748059.41UniProt (A0A1D8NGI5)
In PDB		Yarrowia lipolytica
31eSubunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer8910035.71UniProt (A0A1D8NNZ0)
Pfam (PF10200)
UniProt (by SIFTS) (B5RSL7)
In PDB		Yarrowia lipolytica
32fSubunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer13816175.11UniProt (A0A1D8N5V2)
Pfam (PF05071)
UniProt (by SIFTS) (Q6CG53)
In PDB		Yarrowia lipolytica
33gSubunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer24928479.91UniProt (Q6ZY23)
UniProt (by SIFTS) (F2Z673)
In PDB		Yarrowia lipolytica
34hsubunit NUNM of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer13915818.81UniProt (A0A371CFV9)
UniProt (by SIFTS) (Q6C1R9)
In PDB		Yarrowia lipolytica
35iSubunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer909794.01UniProt (A0A1H6Q311)
In PDB		Yarrowia lipolytica
36jsubunit NIGM of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer9110765.41UniProt (A0A1D8NFX6)
In PDB		Yarrowia lipolytica
37kSubunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer606948.91UniProt (A0A371C0F2)
Pfam (PF08122)
UniProt (by SIFTS) (B5FVE5)
In PDB		Yarrowia lipolytica
38lSubunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer14917328.51UniProt (A0A1D8ND94)
Pfam (PF05821)
UniProt (by SIFTS) (Q6CA88)
In PDB		Yarrowia lipolytica
39mSubunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer9310494.91UniProt (Q6ZY24)
UniProt (by SIFTS) (B5RSK9)
In PDB		Yarrowia lipolytica
40nSubunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer10912902.91UniProt (A0A1D8NDL1)
UniProt (by SIFTS) (Q6C9Z1)
In PDB		Yarrowia lipolytica
41oSubunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer9911219.01UniProt (A0A1H6PKH9)
Pfam (PF05676)
UniProt (by SIFTS) (B5FVG1)
In PDB		Yarrowia lipolytica
42pSubunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer9211039.31UniProt (A0A1D8N596)
Pfam (PF10249)
UniProt (by SIFTS) (B5RSK3)
In PDB		Yarrowia lipolytica
43H, Y, I, Z, L...1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINEnon-polymer748.118Chemie (3PE)
44I, B, F, GIRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
45Y, M, BDODECYL-BETA-D-MALTOSIDEnon-polymer510.65Chemie (LMT)
46H, L, d, N, D...DIUNDECYL PHOSPHATIDYL CHOLINEnon-polymer622.88Chemie (PLC)
47G, EFE2/S2 (INORGANIC) CLUSTERnon-polymer175.82Chemie (FES)
48FFLAVIN MONONUCLEOTIDEnon-polymer456.31Chemie (FMN)
49Z, a, b, M, O...CARDIOLIPINnon-polymer1464.06Chemie (CDL)
50PNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer745.41Chemie (NDP)
51RZINC IONnon-polymer65.41Chemie (ZN)
52T, U~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioatenon-polymer584.72Chemie (EHZ)
53waterwater18.0275Chemie (HOH)
Sequence modifications
C: 1 - 281 (UniProt: Q9UUU0)
PDBExternal DatabaseDetails
Ala 282-expression tag
Ala 283-expression tag
Ala 284-expression tag
Ala 285-expression tag
Ala 286-expression tag
Ala 287-expression tag
His 288-expression tag
His 289-expression tag
His 290-expression tag
His 291-expression tag
His 292-expression tag
His 293-expression tag
j: 1 - 67 (UniProt: A0A1D8NFX6)
PDBExternal DatabaseDetails
Met -23-initiating methionine
His -22-expression tag
Asn -21-expression tag
Ser -20-expression tag
Ser -19-expression tag
Ser -18-expression tag
Val -17-expression tag
His -16-expression tag
His -15-expression tag
His -14-expression tag
Tyr -13-expression tag
Ile -12-expression tag
Ser -11-expression tag
Lys -10-expression tag
Thr -9-expression tag
Thr -8-expression tag
Gly -7-expression tag
Phe -6-expression tag
Phe -5-expression tag
Arg -4-expression tag
Phe -3-expression tag
Arg -2-expression tag
Tyr -1-expression tag
Lys 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains42
Total formula weight985351.4
Non-Polymers*Number of molecules50
Total formula weight34683.2
All*Total formula weight1020034.6
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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