6YJ4
Structure of Yarrowia lipolytica complex I at 2.7 A
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005739 | cellular_component | mitochondrion |
A | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
A | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
A | 0016020 | cellular_component | membrane |
A | 0031966 | cellular_component | mitochondrial membrane |
A | 0055085 | biological_process | transmembrane transport |
A | 0070469 | cellular_component | respirasome |
B | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
B | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
B | 0009060 | biological_process | aerobic respiration |
B | 0015990 | biological_process | electron transport coupled proton transport |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0032981 | biological_process | mitochondrial respiratory chain complex I assembly |
B | 0046872 | molecular_function | metal ion binding |
B | 0048038 | molecular_function | quinone binding |
B | 0051536 | molecular_function | iron-sulfur cluster binding |
B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
B | 0055085 | biological_process | transmembrane transport |
C | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
C | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
C | 0016651 | molecular_function | oxidoreductase activity, acting on NAD(P)H |
C | 0055085 | biological_process | transmembrane transport |
D | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
D | 0006120 | biological_process | mitochondrial electron transport, NADH to ubiquinone |
D | 0016651 | molecular_function | oxidoreductase activity, acting on NAD(P)H |
D | 0048038 | molecular_function | quinone binding |
D | 0051287 | molecular_function | NAD binding |
E | 0003954 | molecular_function | NADH dehydrogenase activity |
E | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
E | 0006120 | biological_process | mitochondrial electron transport, NADH to ubiquinone |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0045271 | cellular_component | respiratory chain complex I |
E | 0046872 | molecular_function | metal ion binding |
E | 0051536 | molecular_function | iron-sulfur cluster binding |
E | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
F | 0003954 | molecular_function | NADH dehydrogenase activity |
F | 0005739 | cellular_component | mitochondrion |
F | 0005743 | cellular_component | mitochondrial inner membrane |
F | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
F | 0006120 | biological_process | mitochondrial electron transport, NADH to ubiquinone |
F | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
F | 0010181 | molecular_function | FMN binding |
F | 0016020 | cellular_component | membrane |
F | 0045271 | cellular_component | respiratory chain complex I |
F | 0046872 | molecular_function | metal ion binding |
F | 0051287 | molecular_function | NAD binding |
F | 0051536 | molecular_function | iron-sulfur cluster binding |
F | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
F | 0055085 | biological_process | transmembrane transport |
F | 0070469 | cellular_component | respirasome |
G | 0003954 | molecular_function | NADH dehydrogenase activity |
G | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
G | 0016020 | cellular_component | membrane |
G | 0016491 | molecular_function | oxidoreductase activity |
G | 0016651 | molecular_function | oxidoreductase activity, acting on NAD(P)H |
G | 0042773 | biological_process | ATP synthesis coupled electron transport |
G | 0045333 | biological_process | cellular respiration |
G | 0051536 | molecular_function | iron-sulfur cluster binding |
G | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
G | 0055085 | biological_process | transmembrane transport |
H | 0003954 | molecular_function | NADH dehydrogenase activity |
H | 0005739 | cellular_component | mitochondrion |
H | 0005743 | cellular_component | mitochondrial inner membrane |
H | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
H | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
H | 0009060 | biological_process | aerobic respiration |
H | 0016020 | cellular_component | membrane |
H | 0055085 | biological_process | transmembrane transport |
H | 0070469 | cellular_component | respirasome |
I | 0003954 | molecular_function | NADH dehydrogenase activity |
I | 0005739 | cellular_component | mitochondrion |
I | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
I | 0006120 | biological_process | mitochondrial electron transport, NADH to ubiquinone |
I | 0016020 | cellular_component | membrane |
I | 0016651 | molecular_function | oxidoreductase activity, acting on NAD(P)H |
I | 0032981 | biological_process | mitochondrial respiratory chain complex I assembly |
I | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
J | 0005739 | cellular_component | mitochondrion |
J | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
J | 0016020 | cellular_component | membrane |
J | 0031966 | cellular_component | mitochondrial membrane |
J | 0055085 | biological_process | transmembrane transport |
J | 0070469 | cellular_component | respirasome |
K | 0005739 | cellular_component | mitochondrion |
K | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
K | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
K | 0016020 | cellular_component | membrane |
K | 0016651 | molecular_function | oxidoreductase activity, acting on NAD(P)H |
K | 0031966 | cellular_component | mitochondrial membrane |
K | 0042773 | biological_process | ATP synthesis coupled electron transport |
K | 0055085 | biological_process | transmembrane transport |
K | 0070469 | cellular_component | respirasome |
L | 0003954 | molecular_function | NADH dehydrogenase activity |
L | 0005739 | cellular_component | mitochondrion |
L | 0005743 | cellular_component | mitochondrial inner membrane |
L | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
L | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
L | 0015990 | biological_process | electron transport coupled proton transport |
L | 0016020 | cellular_component | membrane |
L | 0042773 | biological_process | ATP synthesis coupled electron transport |
L | 0070469 | cellular_component | respirasome |
M | 0003954 | molecular_function | NADH dehydrogenase activity |
M | 0005739 | cellular_component | mitochondrion |
M | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
M | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
M | 0009060 | biological_process | aerobic respiration |
M | 0015990 | biological_process | electron transport coupled proton transport |
M | 0016020 | cellular_component | membrane |
M | 0031966 | cellular_component | mitochondrial membrane |
M | 0042773 | biological_process | ATP synthesis coupled electron transport |
M | 0045271 | cellular_component | respiratory chain complex I |
M | 0048039 | molecular_function | ubiquinone binding |
M | 0070469 | cellular_component | respirasome |
N | 0005739 | cellular_component | mitochondrion |
N | 0005743 | cellular_component | mitochondrial inner membrane |
N | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
N | 0016020 | cellular_component | membrane |
N | 0055085 | biological_process | transmembrane transport |
N | 0070469 | cellular_component | respirasome |
O | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
O | 0016020 | cellular_component | membrane |
P | 0005739 | cellular_component | mitochondrion |
P | 0044877 | molecular_function | protein-containing complex binding |
P | 1901006 | biological_process | ubiquinone-6 biosynthetic process |
Q | 0005739 | cellular_component | mitochondrion |
Q | 0005743 | cellular_component | mitochondrial inner membrane |
Q | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
Q | 0016020 | cellular_component | membrane |
Q | 0022900 | biological_process | electron transport chain |
Q | 0070469 | cellular_component | respirasome |
R | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
R | 0006120 | biological_process | mitochondrial electron transport, NADH to ubiquinone |
S | 0005739 | cellular_component | mitochondrion |
S | 0005743 | cellular_component | mitochondrial inner membrane |
S | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
S | 0070469 | cellular_component | respirasome |
T | 0000035 | molecular_function | acyl binding |
T | 0000036 | molecular_function | acyl carrier activity |
T | 0005739 | cellular_component | mitochondrion |
T | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
T | 0006629 | biological_process | lipid metabolic process |
T | 0006631 | biological_process | fatty acid metabolic process |
T | 0006633 | biological_process | fatty acid biosynthetic process |
T | 0009107 | biological_process | lipoate biosynthetic process |
T | 0016226 | biological_process | iron-sulfur cluster assembly |
T | 0099128 | cellular_component | mitochondrial iron-sulfur cluster assembly complex |
U | 0000035 | molecular_function | acyl binding |
U | 0000036 | molecular_function | acyl carrier activity |
U | 0005739 | cellular_component | mitochondrion |
U | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
U | 0006629 | biological_process | lipid metabolic process |
U | 0006631 | biological_process | fatty acid metabolic process |
U | 0006633 | biological_process | fatty acid biosynthetic process |
V | 0005739 | cellular_component | mitochondrion |
V | 0005743 | cellular_component | mitochondrial inner membrane |
V | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
V | 0016020 | cellular_component | membrane |
V | 0022904 | biological_process | respiratory electron transport chain |
W | 0005739 | cellular_component | mitochondrion |
W | 0005743 | cellular_component | mitochondrial inner membrane |
W | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
W | 0006979 | biological_process | response to oxidative stress |
W | 0016020 | cellular_component | membrane |
W | 0070469 | cellular_component | respirasome |
X | 0005739 | cellular_component | mitochondrion |
X | 0005743 | cellular_component | mitochondrial inner membrane |
X | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
X | 0006120 | biological_process | mitochondrial electron transport, NADH to ubiquinone |
X | 0016020 | cellular_component | membrane |
X | 0070469 | cellular_component | respirasome |
Y | 0005739 | cellular_component | mitochondrion |
Y | 0005743 | cellular_component | mitochondrial inner membrane |
Y | 0005744 | cellular_component | TIM23 mitochondrial import inner membrane translocase complex |
Y | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
Y | 0008320 | molecular_function | protein transmembrane transporter activity |
Y | 0016020 | cellular_component | membrane |
Y | 0030150 | biological_process | protein import into mitochondrial matrix |
Y | 0032981 | biological_process | mitochondrial respiratory chain complex I assembly |
Z | 0005739 | cellular_component | mitochondrion |
Z | 0005743 | cellular_component | mitochondrial inner membrane |
Z | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
Z | 0016020 | cellular_component | membrane |
Z | 0070469 | cellular_component | respirasome |
a | 0005739 | cellular_component | mitochondrion |
a | 0005743 | cellular_component | mitochondrial inner membrane |
a | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
a | 0016020 | cellular_component | membrane |
a | 0070469 | cellular_component | respirasome |
b | 0016020 | cellular_component | membrane |
e | 0005739 | cellular_component | mitochondrion |
e | 0005743 | cellular_component | mitochondrial inner membrane |
e | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
e | 0005758 | cellular_component | mitochondrial intermembrane space |
e | 0016020 | cellular_component | membrane |
e | 0032981 | biological_process | mitochondrial respiratory chain complex I assembly |
e | 0070469 | cellular_component | respirasome |
f | 0005739 | cellular_component | mitochondrion |
f | 0005743 | cellular_component | mitochondrial inner membrane |
f | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
f | 0006979 | biological_process | response to oxidative stress |
f | 0016020 | cellular_component | membrane |
f | 0032981 | biological_process | mitochondrial respiratory chain complex I assembly |
f | 0070469 | cellular_component | respirasome |
i | 0016020 | cellular_component | membrane |
k | 0005739 | cellular_component | mitochondrion |
k | 0005743 | cellular_component | mitochondrial inner membrane |
k | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
k | 0016020 | cellular_component | membrane |
k | 0022900 | biological_process | electron transport chain |
k | 0032981 | biological_process | mitochondrial respiratory chain complex I assembly |
k | 0070469 | cellular_component | respirasome |
l | 0005739 | cellular_component | mitochondrion |
l | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
l | 0016020 | cellular_component | membrane |
m | 0016020 | cellular_component | membrane |
n | 0005739 | cellular_component | mitochondrion |
n | 0005743 | cellular_component | mitochondrial inner membrane |
n | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
n | 0006120 | biological_process | mitochondrial electron transport, NADH to ubiquinone |
n | 0016020 | cellular_component | membrane |
n | 0070469 | cellular_component | respirasome |
o | 0005739 | cellular_component | mitochondrion |
o | 0005743 | cellular_component | mitochondrial inner membrane |
o | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
o | 0005758 | cellular_component | mitochondrial intermembrane space |
o | 0016020 | cellular_component | membrane |
p | 0005739 | cellular_component | mitochondrion |
p | 0005743 | cellular_component | mitochondrial inner membrane |
p | 0005747 | cellular_component | mitochondrial respiratory chain complex I |
p | 0016020 | cellular_component | membrane |
p | 0070469 | cellular_component | respirasome |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue 3PE A 501 |
Chain | Residue |
A | ASN2 |
A | PHE4 |
H | LEU102 |
H | ASN103 |
J | TYR48 |
J | GLY53 |
site_id | AC2 |
Number of Residues | 11 |
Details | binding site for residue 3PE A 502 |
Chain | Residue |
A | LYS29 |
B | ILE203 |
B | TRP207 |
P | GLU86 |
P | LYS211 |
P | TRP306 |
P | PLC401 |
P | CDL403 |
A | LEU24 |
A | ALA26 |
A | VAL27 |
site_id | AC3 |
Number of Residues | 9 |
Details | binding site for residue SF4 B 301 |
Chain | Residue |
B | CYS85 |
B | CYS86 |
B | GLY148 |
B | SER149 |
B | CYS150 |
B | CYS180 |
B | PRO181 |
D | 2MR121 |
D | ARG141 |
site_id | AC4 |
Number of Residues | 13 |
Details | binding site for residue LMT B 302 |
Chain | Residue |
B | SER94 |
B | ASP101 |
B | HOH413 |
D | LEU204 |
H | THR23 |
H | ARG36 |
H | ALA50 |
H | ASP53 |
H | PHE228 |
H | LEU229 |
H | TYR232 |
H | ARG297 |
H | HOH706 |
site_id | AC5 |
Number of Residues | 8 |
Details | binding site for residue PLC D 501 |
Chain | Residue |
D | ALA36 |
D | GLY38 |
L | GLY588 |
L | PRO589 |
L | ILE592 |
M | GLU161 |
M | TYR166 |
M | PHE170 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue FES E 301 |
Chain | Residue |
E | CYS127 |
E | THR129 |
E | PRO131 |
E | CYS132 |
E | CYS168 |
E | LEU169 |
E | ALA171 |
E | CYS172 |
site_id | AC7 |
Number of Residues | 16 |
Details | binding site for residue FMN F 501 |
Chain | Residue |
F | GLY86 |
F | ARG87 |
F | GLY88 |
F | LYS97 |
F | ASN118 |
F | ASP120 |
F | GLU121 |
F | GLY122 |
F | TYR206 |
F | GLY209 |
F | GLU210 |
F | GLU211 |
F | VAL244 |
F | THR245 |
F | ASN246 |
F | THR249 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue SF4 F 502 |
Chain | Residue |
F | SER380 |
F | CYS381 |
F | GLN383 |
F | CYS384 |
F | CYS387 |
F | CYS427 |
site_id | AC9 |
Number of Residues | 9 |
Details | binding site for residue SF4 G 801 |
Chain | Residue |
G | HIS129 |
G | PRO130 |
G | ASP132 |
G | CYS133 |
G | CYS136 |
G | GLY139 |
G | CYS142 |
G | VAL235 |
G | GLY236 |
site_id | AD1 |
Number of Residues | 8 |
Details | binding site for residue SF4 G 802 |
Chain | Residue |
G | MET180 |
G | CYS183 |
G | ILE184 |
G | CYS186 |
G | THR187 |
G | CYS189 |
G | CYS233 |
G | VAL235 |
site_id | AD2 |
Number of Residues | 7 |
Details | binding site for residue FES G 803 |
Chain | Residue |
G | CYS83 |
G | CYS97 |
G | CYS69 |
G | TYR70 |
G | GLY78 |
G | CYS80 |
G | ARG81 |
site_id | AD3 |
Number of Residues | 8 |
Details | binding site for residue PLC H 601 |
Chain | Residue |
B | TRP70 |
H | PHE41 |
H | VAL42 |
H | GLY43 |
H | TYR44 |
H | LEU48 |
f | LEU24 |
f | ASN25 |
site_id | AD4 |
Number of Residues | 2 |
Details | binding site for residue 3PE H 602 |
Chain | Residue |
H | TRP177 |
H | ASN254 |
site_id | AD5 |
Number of Residues | 9 |
Details | binding site for residue 3PE I 6301 |
Chain | Residue |
D | ARG269 |
H | PRO184 |
H | PHE303 |
H | PHE311 |
I | THR75 |
I | TYR77 |
I | PHE78 |
I | PHE84 |
Z | LEU34 |
site_id | AD6 |
Number of Residues | 9 |
Details | binding site for residue SF4 I 6302 |
Chain | Residue |
I | HIS118 |
I | CYS140 |
I | CYS169 |
I | ILE170 |
I | TYR171 |
I | CYS172 |
I | GLY173 |
I | CYS175 |
I | GLU186 |
site_id | AD7 |
Number of Residues | 9 |
Details | binding site for residue SF4 I 6303 |
Chain | Residue |
I | CYS130 |
I | ILE131 |
I | CYS133 |
I | LYS134 |
I | CYS136 |
I | TYR162 |
I | CYS179 |
I | VAL181 |
I | ILE184 |
site_id | AD8 |
Number of Residues | 8 |
Details | binding site for residue PLC L 1001 |
Chain | Residue |
L | ILE296 |
L | LYS431 |
L | ASN529 |
L | PHE536 |
L | ILE543 |
L | TYR547 |
n | TRP29 |
n | SER31 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residue PLC L 1002 |
Chain | Residue |
L | PHE278 |
L | TRP282 |
L | SER410 |
l | PHE105 |
l | SER108 |
l | THR112 |
l | TYR113 |
site_id | AE1 |
Number of Residues | 12 |
Details | binding site for residue 3PE L 1003 |
Chain | Residue |
L | GLN162 |
L | LYS165 |
L | SER166 |
L | LEU168 |
L | SER169 |
L | LEU172 |
L | LEU238 |
L | ASN561 |
L | ILE565 |
M | ILE422 |
l | PRO82 |
l | ASP83 |
site_id | AE2 |
Number of Residues | 15 |
Details | binding site for residue 3PE L 1004 |
Chain | Residue |
L | ARG586 |
L | GLY591 |
L | ARG594 |
L | LEU595 |
L | LYS598 |
L | ILE643 |
L | LEU650 |
L | TYR651 |
L | PHE654 |
L | SER655 |
L | 3PE1006 |
Y | TRP121 |
Y | LEU124 |
Y | PHE132 |
Y | PHE139 |
site_id | AE3 |
Number of Residues | 15 |
Details | binding site for residue 3PE L 1005 |
Chain | Residue |
L | ASN602 |
L | LEU606 |
L | LEU620 |
L | ILE623 |
L | SER627 |
L | LEU630 |
L | LEU646 |
L | ILE652 |
L | LEU653 |
N | PRO216 |
N | ILE262 |
N | ILE265 |
Y | ALA43 |
Y | ARG47 |
Y | LEU50 |
site_id | AE4 |
Number of Residues | 6 |
Details | binding site for residue 3PE L 1006 |
Chain | Residue |
L | ARG586 |
L | 3PE1004 |
Y | PRO116 |
Y | ALA117 |
Y | GLY120 |
m | TYR48 |
site_id | AE5 |
Number of Residues | 9 |
Details | binding site for residue PLC L 1007 |
Chain | Residue |
L | HIS112 |
L | ARG115 |
M | THR366 |
M | THR367 |
M | THR374 |
M | ILE377 |
i | SER14 |
i | THR16 |
i | GLY18 |
site_id | AE6 |
Number of Residues | 15 |
Details | binding site for residue CDL M 501 |
Chain | Residue |
L | PHE21 |
M | THR87 |
M | GLN371 |
M | TYR375 |
M | LYS451 |
M | ASN455 |
M | ILE456 |
M | ILE458 |
g | TYR169 |
g | ALA173 |
g | MET183 |
h | LYS53 |
h | TRP54 |
h | VAL62 |
i | MET15 |
site_id | AE7 |
Number of Residues | 3 |
Details | binding site for residue 3PE M 502 |
Chain | Residue |
M | ASN110 |
M | LEU113 |
N | TYR359 |
site_id | AE8 |
Number of Residues | 4 |
Details | binding site for residue LMT M 503 |
Chain | Residue |
M | ASN56 |
M | LEU68 |
M | TRP130 |
M | 3PE504 |
site_id | AE9 |
Number of Residues | 6 |
Details | binding site for residue 3PE M 504 |
Chain | Residue |
M | PHE38 |
M | LEU42 |
M | LEU68 |
M | SER136 |
M | LEU140 |
M | LMT503 |
site_id | AF1 |
Number of Residues | 6 |
Details | binding site for residue PLC N 2401 |
Chain | Residue |
N | TYR67 |
N | MET70 |
N | ILE460 |
N | ILE463 |
N | PHE468 |
d | LEU50 |
site_id | AF2 |
Number of Residues | 12 |
Details | binding site for residue 3PE N 2402 |
Chain | Residue |
J | SER107 |
J | LEU118 |
K | LEU8 |
K | PHE12 |
L | VAL632 |
N | LEU167 |
N | ASN198 |
N | LEU199 |
N | ILE202 |
N | SER257 |
N | LEU258 |
N | VAL259 |
site_id | AF3 |
Number of Residues | 15 |
Details | binding site for residue CDL O 401 |
Chain | Residue |
A | ASN85 |
A | TYR86 |
A | PHE88 |
H | TYR332 |
J | PHE160 |
J | VAL164 |
N | ILE3 |
O | HIS27 |
O | LYS29 |
O | SER129 |
O | SER130 |
O | PRO154 |
O | PHE158 |
O | VAL159 |
b | LEU41 |
site_id | AF4 |
Number of Residues | 11 |
Details | binding site for residue PLC P 401 |
Chain | Residue |
A | 3PE502 |
B | TRP207 |
P | GLU134 |
P | THR135 |
P | LYS136 |
P | GLN302 |
P | ALA303 |
P | ILE304 |
P | TRP305 |
P | TRP306 |
P | PRO307 |
site_id | AF5 |
Number of Residues | 15 |
Details | binding site for residue NDP P 402 |
Chain | Residue |
P | GLY60 |
P | PHE64 |
P | LEU65 |
P | ARG85 |
P | LEU109 |
P | LEU128 |
P | ILE129 |
P | GLY130 |
P | ARG131 |
P | PHE138 |
P | VAL166 |
P | ALA168 |
P | LYS183 |
P | MET205 |
P | HOH510 |
site_id | AF6 |
Number of Residues | 7 |
Details | binding site for residue CDL P 403 |
Chain | Residue |
A | TYR28 |
A | 3PE502 |
P | ARG216 |
P | ARG219 |
P | SER220 |
P | LEU289 |
P | TYR297 |
site_id | AF7 |
Number of Residues | 4 |
Details | binding site for residue ZN R 201 |
Chain | Residue |
R | CYS97 |
R | HIS110 |
R | CYS125 |
R | CYS128 |
site_id | AF8 |
Number of Residues | 10 |
Details | binding site for residue EHZ T 201 |
Chain | Residue |
T | SER66 |
W | GLN22 |
W | LEU26 |
W | PHE32 |
W | GLU59 |
W | PHE60 |
W | HIS63 |
W | ARG64 |
W | VAL66 |
W | GLN72 |
site_id | AF9 |
Number of Residues | 9 |
Details | binding site for residue EHZ U 201 |
Chain | Residue |
U | SER89 |
n | PRO6 |
n | ASN11 |
n | LYS46 |
n | PHE47 |
n | ASN50 |
n | LEU59 |
n | THR62 |
n | THR66 |
site_id | AG1 |
Number of Residues | 5 |
Details | binding site for residue LMT Y 4201 |
Chain | Residue |
M | ILE209 |
Y | ALA145 |
Y | PHE163 |
Y | TRP164 |
Y | LMT4202 |
site_id | AG2 |
Number of Residues | 6 |
Details | binding site for residue LMT Y 4202 |
Chain | Residue |
M | PHE177 |
Y | LEU131 |
Y | TRP134 |
Y | THR135 |
Y | GLY136 |
Y | LMT4201 |
site_id | AG3 |
Number of Residues | 4 |
Details | binding site for residue 3PE Y 4203 |
Chain | Residue |
Y | ASP93 |
Y | GLY94 |
Y | TRP95 |
Y | TRP134 |
site_id | AG4 |
Number of Residues | 4 |
Details | binding site for residue LMT Y 4204 |
Chain | Residue |
Y | ARG89 |
Y | TRP95 |
Y | MET98 |
Y | TRP99 |
site_id | AG5 |
Number of Residues | 7 |
Details | binding site for residue CDL Z 201 |
Chain | Residue |
I | TYR88 |
Z | ARG26 |
Z | GLY27 |
Z | PHE28 |
Z | ARG29 |
Z | TYR33 |
Z | 3PE202 |
site_id | AG6 |
Number of Residues | 9 |
Details | binding site for residue 3PE Z 202 |
Chain | Residue |
H | TRP295 |
I | LYS76 |
I | ALA81 |
Z | ARG26 |
Z | GLY27 |
Z | PHE28 |
Z | PRO30 |
Z | TYR33 |
Z | CDL201 |
site_id | AG7 |
Number of Residues | 8 |
Details | binding site for residue 3PE Z 203 |
Chain | Residue |
H | ILE326 |
X | TRP149 |
Z | PHE45 |
Z | TYR46 |
Z | GLN53 |
b | ALA35 |
b | LEU43 |
b | TYR52 |
site_id | AG8 |
Number of Residues | 8 |
Details | binding site for residue CDL a 101 |
Chain | Residue |
I | TYR88 |
I | PHE95 |
a | ALA2 |
a | ILE3 |
c | SER17 |
c | TRP21 |
c | LEU28 |
f | SER4 |
site_id | AG9 |
Number of Residues | 11 |
Details | binding site for residue CDL b 401 |
Chain | Residue |
N | SER8 |
N | THR11 |
N | MET15 |
O | LYS73 |
O | ARG76 |
O | VAL77 |
b | ASN5 |
b | PHE8 |
b | TRP9 |
b | TYR15 |
b | 3PE402 |
site_id | AH1 |
Number of Residues | 13 |
Details | binding site for residue 3PE b 402 |
Chain | Residue |
A | ILE99 |
A | ASN107 |
A | ASN109 |
b | ASN5 |
b | TYR15 |
b | LEU16 |
b | SER19 |
b | ARG23 |
b | LEU26 |
b | ALA29 |
b | PHE30 |
b | CDL401 |
b | 3PE403 |
site_id | AH2 |
Number of Residues | 7 |
Details | binding site for residue 3PE b 403 |
Chain | Residue |
I | LEU71 |
b | PHE13 |
b | ARG17 |
b | HIS21 |
b | PHE27 |
b | PHE28 |
b | 3PE402 |
site_id | AH3 |
Number of Residues | 6 |
Details | binding site for residue 3PE d 4601 |
Chain | Residue |
M | ASN15 |
N | TYR359 |
d | PHE19 |
d | LYS23 |
d | ALA29 |
g | ASN113 |
site_id | AH4 |
Number of Residues | 8 |
Details | binding site for residue PLC d 4602 |
Chain | Residue |
N | SER437 |
N | TYR441 |
O | TRP59 |
O | LEU60 |
d | LYS18 |
d | TYR32 |
d | GLY35 |
d | ALA42 |
site_id | AH5 |
Number of Residues | 4 |
Details | binding site for residue 3PE d 4603 |
Chain | Residue |
d | GLY12 |
d | PHE19 |
d | ALA29 |
g | ASN113 |
Functional Information from PROSITE/UniProt
site_id | PS00542 |
Number of Residues | 22 |
Details | COMPLEX1_30K Respiratory chain NADH dehydrogenase 30 Kd subunit signature. EREayDMYgvffegHpdlRrIM |
Chain | Residue | Details |
C | GLU179-MET200 |
site_id | PS00535 |
Number of Residues | 12 |
Details | COMPLEX1_49K Respiratory chain NADH dehydrogenase 49 Kd subunit signature. LHRGtEKLiEyK |
Chain | Residue | Details |
D | LEU119-LYS130 |
site_id | PS00198 |
Number of Residues | 12 |
Details | 4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiACKlCEaICP |
Chain | Residue | Details |
I | CYS130-PRO141 | |
I | CYS169-PRO180 |
site_id | PS00641 |
Number of Residues | 18 |
Details | COMPLEX1_75K_1 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. PryCYhdklaiaGnCRmC |
Chain | Residue | Details |
G | PRO66-CYS83 |
site_id | PS00642 |
Number of Residues | 13 |
Details | COMPLEX1_75K_2 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. CPvCDqGGeCdLQ |
Chain | Residue | Details |
G | CYS133-GLN145 |
site_id | PS00643 |
Number of Residues | 11 |
Details | COMPLEX1_75K_3 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. RCIhCtRCVrF |
Chain | Residue | Details |
G | ARG182-PHE192 |
site_id | PS01150 |
Number of Residues | 17 |
Details | COMPLEX1_20K Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. GcDRIVPVDVYvPgCPP |
Chain | Residue | Details |
B | GLY166-PRO182 |
site_id | PS01099 |
Number of Residues | 19 |
Details | COMPLEX1_24K Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. DnlFTlseveCLGaCvnAP |
Chain | Residue | Details |
E | ASP158-PRO176 |
site_id | PS00644 |
Number of Residues | 16 |
Details | COMPLEX1_51K_1 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. GMGAYVCGEETSLIES |
Chain | Residue | Details |
F | GLY202-SER217 |
site_id | PS00645 |
Number of Residues | 12 |
Details | COMPLEX1_51K_2 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. ESCGqCtPCReG |
Chain | Residue | Details |
F | GLU379-GLY390 |
site_id | PS00133 |
Number of Residues | 11 |
Details | CARBOXYPEPT_ZN_2 Zinc carboxypeptidases, zinc-binding region 2 signature. HSIAGLFiFPW |
Chain | Residue | Details |
O | HIS145-TRP155 |
site_id | PS00667 |
Number of Residues | 16 |
Details | COMPLEX1_ND1_1 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. GLLQaFaDAVKLLlKE |
Chain | Residue | Details |
H | GLY46-GLU61 |
site_id | PS00668 |
Number of Residues | 14 |
Details | COMPLEX1_ND1_2 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. PFDLTESEseLVa.G |
Chain | Residue | Details |
H | PRO201-GLY214 |
site_id | PS00012 |
Number of Residues | 16 |
Details | PHOSPHOPANTETHEINE Phosphopantetheine attachment site. DLGLDSLDVVEVVMAI |
Chain | Residue | Details |
U | ASP84-ILE99 | |
T | ASP61-ILE76 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 260 |
Details | TRANSMEM: Helical => ECO:0000255 |
Chain | Residue | Details |
N | LEU27-LEU47 | |
N | SER317-ILE337 | |
N | VAL361-PHE381 | |
N | PHE397-LEU417 | |
N | TYR441-ILE461 | |
L | ILE456-LEU476 | |
L | ILE516-PHE536 | |
L | LEU629-ILE649 | |
N | LEU59-ILE79 | |
N | ILE104-ILE124 | |
N | THR125-ASN145 | |
N | ALA153-ASN173 | |
N | LEU197-LEU217 | |
N | ILE230-LEU250 | |
N | SER257-LEU277 | |
N | LEU284-ASN304 |