6YGG
NADase from Aspergillus fumigatus complexed with a substrate anologue
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | AfNADase | polymer | 248 | 27680.1 | 2 | UniProt (Q4WL81) Pfam (PF14021) In PDB | Aspergillus fumigatus Af293 | |
2 | C, E, F, G | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 4 | In PDB GlyTouCan (G21290RB) | |||
3 | D | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G86851RC) | |||
4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
5 | A, B | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
6 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
7 | B | [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5S)-5-(3-carbamoylphenyl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name) | non-polymer | 662.4 | 1 | Chemie (DQV) | |||
8 | water | water | 18.0 | 458 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 234 (UniProt: Q4WL81)
PDB | External Database | Details |
---|---|---|
Asp 235 | - | expression tag |
Val 236 | - | expression tag |
Leu 237 | - | expression tag |
Phe 238 | - | expression tag |
Gln 239 | - | expression tag |
Gly 240 | - | expression tag |
Pro 241 | - | expression tag |
Gly 242 | - | expression tag |
His 243 | - | expression tag |
His 244 | - | expression tag |
His 245 | - | expression tag |
His 246 | - | expression tag |
His 247 | - | expression tag |
His 248 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 55360.2 | |
Branched | Number of molecules | 5 |
Total formula weight | 2649.5 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 986.8 | |
All* | Total formula weight | 58996.5 |