6YGD
Crystal structure of the NatC complex bound to Gag peptide and CoA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | N-alpha-acetyltransferase 30 | polymer | 159 | 18559.6 | 1 | UniProt (Q03503) Pfam (PF00583) In PDB | Saccharomyces cerevisiae (Baker's yeast) | L-A virus GAG protein N-acetyltransferase subunit MAK3,Maintenance of killer protein 3,N-terminal acetyltransferase C complex catalytic subunit MAK3,NatC complex subunit MAK3,NatC catalytic subunit |
| 2 | B | N-alpha-acetyltransferase 35, NatC auxiliary subunit | polymer | 735 | 84549.3 | 1 | UniProt (Q02197) Pfam (PF04112) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Glucose repressible protein MAK10,L-A virus GAG protein N-acetyltransferase subunit MAK10,Maintenance of killer protein 10,N-terminal acetyltransferase C complex subunit MAK10,NatC complex subunit MAK10 |
| 3 | C | N-alpha-acetyltransferase 38, NatC auxiliary subunit | polymer | 77 | 8550.1 | 1 | UniProt (P23059) Pfam (PF01423) In PDB | Saccharomyces cerevisiae (Baker's yeast) | L-A virus GAG protein N-acetyltransferase subunit MAK31,Maintenance of killer protein 31,N-terminal acetyltransferase C complex subunit MAK31,NatC complex subunit MAK31 |
| 4 | D | Major capsid protein | polymer | 10 | 1281.6 | 1 | UniProt (P32503) In PDB | Saccharomyces cerevisiae virus L-A | Gag protein,Major coat protein |
| 5 | A | COENZYME A | non-polymer | 767.5 | 1 | Chemie (COA) | |||
| 6 | A, B | CHLORIDE ION | non-polymer | 35.5 | 6 | Chemie (CL) | |||
| 7 | B, C | IODIDE ION | non-polymer | 126.9 | 10 | Chemie (IOD) | |||
| 8 | B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 9 | water | water | 18.0 | 93 | Chemie (HOH) |
Sequence modifications
B: 1 - 733 (UniProt: Q02197)
D: 1 - 5 (UniProt: P32503)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | expression tag |
| Pro 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly 6 | - | linker |
| Ser 7 | - | linker |
| Arg 8 | - | expression tag |
| Arg 9 | - | expression tag |
| Arg 10 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 112940.5 | |
| Non-Polymers* | Number of molecules | 22 |
| Total formula weight | 2559.6 | |
| All* | Total formula weight | 115500.2 |
