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6Y9H

Thrombin in complex with D-Phe-Pro-m-Trifluoromethylbenzylamide derivative (phe2)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L)
Prothrombinpolymer364096.51UniProt (P00734)
Pfam (PF09396)
Homo sapiens (Human)Coagulation factor II
2B
(H)
Prothrombinpolymer25929780.21UniProt (P00734)
Pfam (PF00089)
Homo sapiens (Human)Coagulation factor II
3C
(I)
Hirudin variant-2polymer121548.61UniProt (P09945)Hirudo medicinalis
4D
(C)
D-Phe-Pro-m-Trifluoromethylbenzylamide derivative (phe2)polymer3419.41synthetic construct
5E, F
(H)
SODIUM IONnon-polymer23.02Chemie (NA)
6G
(H)
DIMETHYL SULFOXIDEnon-polymer78.11Chemie (DMS)
7H, J
(H)
PHOSPHATE IONnon-polymer95.02Chemie (PO4)
8I
(H)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
9K, L, M, N
(L, H, I, C)
waterwater18.0262Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight35844.8
Non-Polymers*Number of molecules6
Total formula weight535.3
All*Total formula weight36380.0
*Water molecules are not included.

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PDB entries from 2025-07-30

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