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6Y6X

Tetracenomycin X bound to the human ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1L528S ribosomal RNApolymer50691639876.81GenBank (NR_003287)Homo sapiens (human)
2L75S ribosomal RNApolymer12038691.91GenBank (23898)Homo sapiens (human)
3L85.8S ribosomal RNApolymer15650143.61GenBank (555853)Homo sapiens (human)
4LA60S ribosomal protein L8polymer24826998.61UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL2
5LB60S ribosomal protein L3polymer39745564.41UniProt (P39023)
Pfam (PF00297)
In PDB
Homo sapiens (human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
6LC60S ribosomal protein L4polymer36841747.21UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
7LD60S ribosomal protein L5polymer29334008.31UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL18
8LE60S ribosomal protein L6polymer24728378.81UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
9LF60S ribosomal protein L7polymer22526590.71UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL30
10LG60S ribosomal protein L7apolymer24127452.51UniProt (P62424)
Pfam (PF01248)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
11LH60S ribosomal protein L9polymer19021655.31UniProt (P32969)
Pfam (PF00347)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL6
12LI60S ribosomal protein L10-likepolymer21324439.81UniProt (Q96L21)
Pfam (PF00252)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL16-like
13LJ60S ribosomal protein L11polymer17620086.21UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
14LL60S ribosomal protein L13polymer21024190.51UniProt (P26373)
Pfam (PF01294)
In PDB
Homo sapiens (human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
15LM60S ribosomal protein L14polymer13916220.31UniProt (P50914)
Pfam (PF01929)
In PDB
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
16LN60S ribosomal protein L15polymer20324076.11UniProt (P61313)
Pfam (PF00827)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL15
17LO60S ribosomal protein L13apolymer20123431.11UniProt (P40429)
Pfam (PF00572)
In PDB
Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
18LP60S ribosomal protein L17polymer15317757.61UniProt (P18621)
Pfam (PF00237)
In PDB
Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
19LQ60S ribosomal protein L18polymer18721556.51UniProt (Q07020)
Pfam (PF17135)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL18
20LR60S ribosomal protein L19polymer18722441.01UniProt (P84098)
Pfam (PF01280)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL19
21LS60S ribosomal protein L18apolymer17520677.31UniProt (Q02543)
Pfam (PF01775)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL20
22LT60S ribosomal protein L21polymer15918478.81UniProt (P46778)
Pfam (PF01157)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL21
23LU60S ribosomal protein L22polymer9911495.31UniProt (P35268)
Pfam (PF01776)
In PDB
Homo sapiens (human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
24LV60S ribosomal protein L23polymer13113972.41UniProt (P62829)
Pfam (PF00238)
In PDB
Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
25LW60S ribosomal protein L24polymer12414477.01UniProt (P83731)
Pfam (PF01246)
In PDB
Homo sapiens (human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
26LX60S ribosomal protein L23apolymer12013985.51UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL23
27LY60S ribosomal protein L26polymer13415891.81UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL24
28LZ60S ribosomal protein L27polymer13515704.61UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL27
29La60S ribosomal protein L27apolymer14716473.31UniProt (P46776)
Pfam (PF00828)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL15
30Lb60S ribosomal protein L29polymer12113965.81UniProt (P47914)
Pfam (PF01779)
In PDB
Homo sapiens (human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
31Lc60S ribosomal protein L30polymer9810954.91UniProt (P62888)
Pfam (PF01248)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL30
32Ld60S ribosomal protein L31polymer10712635.71UniProt (P62899)
Pfam (PF01198)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL31
33Le60S ribosomal protein L32polymer12815022.01UniProt (P62910)
Pfam (PF01655)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL32
34Lf60S ribosomal protein L35apolymer10912433.51UniProt (P18077)
Pfam (PF01247)
In PDB
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
35Lg60S ribosomal protein L34polymer11412994.61UniProt (P49207)
Pfam (PF01199)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL34
36Lh60S ribosomal protein L35polymer12214462.41UniProt (P42766)
Pfam (PF00831)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL29
37Li60S ribosomal protein L36polymer10211915.41UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL36
38Lj60S ribosomal protein L37polymer8610090.91UniProt (P61927)
Pfam (PF01907)
In PDB
Homo sapiens (human)G1.16,Large ribosomal subunit protein eL37
39Lk60S ribosomal protein L38polymer698107.81UniProt (P63173)
Pfam (PF01781)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL38
40Ll60S ribosomal protein L39polymer506295.61UniProt (P62891)
Pfam (PF00832)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL39
41LmUbiquitin-60S ribosomal protein L40polymer526199.61UniProt (P62987)
Pfam (PF01020)
In PDB
Homo sapiens (human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
42Ln60S ribosomal protein L41polymer243344.31UniProt (P62945)
Pfam (PF05162)
In PDB
Homo sapiens (human)HG12,Large ribosomal subunit protein eL41
43Lo60S ribosomal protein L36apolymer10512345.81UniProt (P83881)
Pfam (PF00935)
In PDB
Homo sapiens (human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
44Lp60S ribosomal protein L37apolymer9110168.21UniProt (P61513)
Pfam (PF01780)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL43
45Lr60S ribosomal protein L28polymer12514320.81UniProt (P46779)
Pfam (PF01778)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL28
46Lz60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
In PDB
Homo sapiens (human)CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
47L5, L7, L8, LA, LI...MAGNESIUM IONnon-polymer24.3229Chemie (MG)
48L5Tetracenomycin Xnon-polymer486.41Chemie (OCW)
49Lg, Lj, Lm, Lo, LpZINC IONnon-polymer65.45Chemie (ZN)
Sequence modifications
L5: 1 - 5069 (GenBank: NR_003287)
PDBExternal DatabaseDetails
C 2113G 2113conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains46
Total formula weight2516600.0
Non-Polymers*Number of molecules235
Total formula weight6379.3
All*Total formula weight2522979.3
*Water molecules are not included.

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PDB entries from 2024-07-24

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