6Y64

Structure of Sheep Polyomavirus VP1 in complex with 6'-Sialyllactosamine

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E...	Capsid protein VP1	polymer	293	32466.5	10	UniProt (A0A0E3ZCF3) Pfam (PF00718) In PDB	Sheep polyomavirus 1
2	K, L, N	N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose	branched		471.4	3	In PDB GlyTouCan (G63069TR)
3	M	N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		674.6	1	In PDB BIRD (PRD_900046) GlyTouCan (G73578JC)		6'-sialyl-N-acetyllactosamine
4	I, D, E, J, F...	GLYCEROL	non-polymer		92.1	20	Chemie (GOL)
5	D, I, E, J, F...	1,2-ETHANEDIOL	non-polymer		62.1	12	Chemie (EDO)
6	C, D, I, F, A...	MAGNESIUM ION	non-polymer		24.3	14	Chemie (MG)
7	B, C	N-acetyl-alpha-neuraminic acid	non-polymer		309.3	2	Chemie (SIA)
8		water	water		18.0	2753	Chemie (HOH)

Sequence modifications

A, B, C, D, E, F, G, H, I, J: 20 - 291 (UniProt: A0A0E3ZCF3)

PDB	External Database	Details
Met -1	-	initiating methionine
Gly 0	-	expression tag
Ser 1	-	expression tag
Ser 2	-	expression tag
His 3	-	expression tag
His 4	-	expression tag
His 5	-	expression tag
His 6	-	expression tag
His 7	-	expression tag
His 8	-	expression tag
Ser 9	-	expression tag
Ser 10	-	expression tag
Gly 11	-	expression tag
Leu 12	-	expression tag
Val 13	-	expression tag
Pro 14	-	expression tag
Arg 15	-	expression tag
Gly 16	-	expression tag
Ser 17	-	expression tag
His 18	-	expression tag
Met 19	-	expression tag
Ser 95	Cys 96	conflict

Contents of the asymmetric unit

Polymers	Number of chains	10
	Total formula weight	324665.0
Branched	Number of molecules	4
	Total formula weight	2088.8
Non-Polymers*	Number of molecules	48
	Total formula weight	3545.5
All*	Total formula weight	330299.3

*Water molecules are not included.