6Y64
Structure of Sheep Polyomavirus VP1 in complex with 6'-Sialyllactosamine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Capsid protein VP1 | polymer | 293 | 32466.5 | 10 | UniProt (A0A0E3ZCF3) | Sheep polyomavirus 1 | |
| 2 | K, L, N (K, L, N) | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose | branched | 471.4 | 3 | In PDB GlyTouCan (G63069TR) | |||
| 3 | M (M) | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 674.6 | 1 | In PDB BIRD (PRD_900046) GlyTouCan (G73578JC) | 6'-sialyl-N-acetyllactosamine | ||
| 4 | AB, BB, CA, CB, DA... (I, D, E, J, F...) | GLYCEROL | non-polymer | 92.1 | 20 | Chemie (GOL) | |||
| 5 | EA, FB, IA, JA, JB... (D, I, E, J, F...) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 12 | Chemie (EDO) | |||
| 6 | AA, BA, FA, GB, HB... (C, D, I, F, A...) | MAGNESIUM ION | non-polymer | 24.3 | 14 | Chemie (MG) | |||
| 7 | T, X (B, C) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 2 | Chemie (SIA) | |||
| 8 | KB, LB, MB, NB, OB... (A, B, C, D, E...) | water | water | 18.0 | 2753 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J: 20 - 291 (UniProt: A0A0E3ZCF3)
| PDB | External Database | Details |
|---|---|---|
| Met -1 | - | initiating methionine |
| Gly 0 | - | expression tag |
| Ser 1 | - | expression tag |
| Ser 2 | - | expression tag |
| His 3 | - | expression tag |
| His 4 | - | expression tag |
| His 5 | - | expression tag |
| His 6 | - | expression tag |
| His 7 | - | expression tag |
| His 8 | - | expression tag |
| Ser 9 | - | expression tag |
| Ser 10 | - | expression tag |
| Gly 11 | - | expression tag |
| Leu 12 | - | expression tag |
| Val 13 | - | expression tag |
| Pro 14 | - | expression tag |
| Arg 15 | - | expression tag |
| Gly 16 | - | expression tag |
| Ser 17 | - | expression tag |
| His 18 | - | expression tag |
| Met 19 | - | expression tag |
| Ser 95 | Cys 96 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 324665.0 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2088.8 | |
| Non-Polymers* | Number of molecules | 48 |
| Total formula weight | 3545.5 | |
| All* | Total formula weight | 330299.3 |
