6Y64
Structure of Sheep Polyomavirus VP1 in complex with 6'-Sialyllactosamine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2016-11-27 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 129.620, 81.260, 146.660 |
Unit cell angles | 90.00, 115.52, 90.00 |
Refinement procedure
Resolution | 47.470 - 1.600 |
R-factor | 0.15197 |
Rwork | 0.152 |
R-free | 0.18218 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fmg |
RMSD bond length | 0.009 |
RMSD bond angle | 1.510 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.470 | 1.657 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmeas | 0.071 | 0.727 |
Number of reflections | 350203 | 34182 |
<I/σ(I)> | 17.78 | 2.94 |
Completeness [%] | 96.8 | |
Redundancy | 6.8 | |
CC(1/2) | 0.999 | 0.821 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | Magnesium chloride, PEG 800, TRIS |