6Y63

Structure of Sheep Polyomavirus VP1 in complex with 3'-Sialyllactosamine

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E... (AAA, BBB, CCC, DDD, EEE...)	Capsid protein VP1	polymer	293	32466.5	10	UniProt (A0A0E3ZCF3)	Sheep polyomavirus 1
2	K, L, M, N (A, B, C, D)	N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose	branched		471.4	4	In PDB GlyTouCan (G30207PZ)
3	CA, DA, EA, FA, GA... (EEE, FFF, GGG, HHH, AAA...)	(4S)-2-METHYL-2,4-PENTANEDIOL	non-polymer		118.2	22	Chemie (MPD)
4	AA, HA, IA, MA, PA... (DDD, FFF, GGG, HHH, AAA...)	MAGNESIUM ION	non-polymer		24.3	11	Chemie (MG)
5	BA, JA (EEE, GGG)	N-acetyl-alpha-neuraminic acid	non-polymer		309.3	2	Chemie (SIA)
6	AB, BB, CB, DB, EB... (DDD, EEE, FFF, GGG, HHH...)	water	water		18.0	2308	Chemie (HOH)

Sequence modifications

AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 20 - 291 (UniProt: A0A0E3ZCF3)

PDB	External Database	Details
Met -1	-	initiating methionine
Gly 0	-	expression tag
Ser 1	-	expression tag
Ser 2	-	expression tag
His 3	-	expression tag
His 4	-	expression tag
His 5	-	expression tag
His 6	-	expression tag
His 7	-	expression tag
His 8	-	expression tag
Ser 9	-	expression tag
Ser 10	-	expression tag
Gly 11	-	expression tag
Leu 12	-	expression tag
Val 13	-	expression tag
Pro 14	-	expression tag
Arg 15	-	expression tag
Gly 16	-	expression tag
Ser 17	-	expression tag
His 18	-	expression tag
Met 19	-	expression tag
Ser 95	Cys 96	conflict

Contents of the asymmetric unit

Polymers	Number of chains	10
	Total formula weight	324665.0
Branched	Number of molecules	4
	Total formula weight	1885.6
Non-Polymers*	Number of molecules	35
	Total formula weight	3485.7
All*	Total formula weight	330036.4

*Water molecules are not included.