6Y63
Structure of Sheep Polyomavirus VP1 in complex with 3'-Sialyllactosamine
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AAA, BBB, CCC, DDD, EEE... | Capsid protein VP1 | polymer | 293 | 32466.5 | 10 | UniProt (A0A0E3ZCF3) Pfam (PF00718) In PDB | Sheep polyomavirus 1 | |
2 | A, B, C, D | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose | branched | 471.4 | 4 | In PDB GlyTouCan (G30207PZ) | |||
3 | EEE, FFF, GGG, HHH, AAA... | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 22 | Chemie (MPD) | |||
4 | DDD, FFF, GGG, HHH, AAA... | MAGNESIUM ION | non-polymer | 24.3 | 11 | Chemie (MG) | |||
5 | EEE, GGG | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 2 | Chemie (SIA) | |||
6 | water | water | 18.0 | 2308 | Chemie (HOH) |
Sequence modifications
AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 20 - 291 (UniProt: A0A0E3ZCF3)
PDB | External Database | Details |
---|---|---|
Met -1 | - | initiating methionine |
Gly 0 | - | expression tag |
Ser 1 | - | expression tag |
Ser 2 | - | expression tag |
His 3 | - | expression tag |
His 4 | - | expression tag |
His 5 | - | expression tag |
His 6 | - | expression tag |
His 7 | - | expression tag |
His 8 | - | expression tag |
Ser 9 | - | expression tag |
Ser 10 | - | expression tag |
Gly 11 | - | expression tag |
Leu 12 | - | expression tag |
Val 13 | - | expression tag |
Pro 14 | - | expression tag |
Arg 15 | - | expression tag |
Gly 16 | - | expression tag |
Ser 17 | - | expression tag |
His 18 | - | expression tag |
Met 19 | - | expression tag |
Ser 95 | Cys 96 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 324665.0 | |
Branched | Number of molecules | 4 |
Total formula weight | 1885.6 | |
Non-Polymers* | Number of molecules | 35 |
Total formula weight | 3485.7 | |
All* | Total formula weight | 330036.4 |