6Y63
Structure of Sheep Polyomavirus VP1 in complex with 3'-Sialyllactosamine
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2019-11-16 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 0.999 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 130.286, 79.930, 145.884 |
Unit cell angles | 90.00, 116.00, 90.00 |
Refinement procedure
Resolution | 48.807 - 1.651 |
Rwork | 0.169 |
R-free | 0.19990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fmg |
RMSD bond length | 0.007 |
RMSD bond angle | 1.481 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.810 | 1.710 |
High resolution limit [Å] | 1.651 | 1.651 |
Rmeas | 0.101 | 1.547 |
Number of reflections | 322288 | 31681 |
<I/σ(I)> | 13.87 | 1.22 |
Completeness [%] | 99.8 | |
Redundancy | 6.8 | |
CC(1/2) | 0.999 | 0.471 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | KSCN, PEG 3350 |