6Y60
Structure of Human Polyomavirus 12 VP1 in complex with 3'-Sialyllactosamine
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (AAA, BBB, CCC, DDD, EEE...) | Capsid protein VP1 | polymer | 277 | 30708.7 | 10 | UniProt (M4T5D3) Pfam (PF00718) | Human polyomavirus 12 | |
| 2 | K, L, M, N, O... (A, B, C, D, E...) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose | branched | 471.4 | 7 | In PDB GlyTouCan (G30207PZ) | |||
| 3 | R, T, V, W, X (AAA, BBB, CCC, DDD, EEE) | PHOSPHATE ION | non-polymer | 95.0 | 5 | Chemie (PO4) | |||
| 4 | S, U, Y (BBB, CCC, GGG) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 3 | Chemie (SIA) | |||
| 5 | AA, BA, CA, DA, EA... (BBB, CCC, DDD, EEE, FFF...) | water | water | 18.0 | 1825 | Chemie (HOH) |
Sequence modifications
AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 27 - 299 (UniProt: M4T5D3)
| PDB | External Database | Details |
|---|---|---|
| Gly 23 | - | expression tag |
| Ser 24 | - | expression tag |
| His 25 | - | expression tag |
| Met 26 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 307086.6 | |
| Branched | Number of molecules | 7 |
| Total formula weight | 3299.9 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 1402.7 | |
| All* | Total formula weight | 311789.2 |
