6Y5Y
Structure of New Jersey Polyomavirus VP1 in complex with 3'-Sialyllactose
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... | VP1 | polymer | 311 | 34096.6 | 10 | UniProt (A0A024B5J2) Pfam (PF00718) In PDB | New Jersey polyomavirus-2013 | |
2 | K, M, O, P | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | branched | 633.6 | 4 | In PDB BIRD (PRD_900025) GlyTouCan (G92323ZH) | 3'-sialyl-alpha-lactose | ||
3 | L, N, Q, R, S... | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 633.6 | 6 | In PDB GlyTouCan (G91237TK) | |||
4 | G, B, H, C, I... | GLYCEROL | non-polymer | 92.1 | 39 | Chemie (GOL) | |||
5 | A, G, B, H, D... | MAGNESIUM ION | non-polymer | 24.3 | 10 | Chemie (MG) | |||
6 | water | water | 18.0 | 2777 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J: 35 - 322 (UniProt: A0A024B5J2)
PDB | External Database | Details |
---|---|---|
Met 12 | - | initiating methionine |
Gly 13 | - | expression tag |
Ser 14 | - | expression tag |
Ser 15 | - | expression tag |
His 16 | - | expression tag |
His 17 | - | expression tag |
His 18 | - | expression tag |
His 19 | - | expression tag |
His 20 | - | expression tag |
His 21 | - | expression tag |
Ser 22 | - | expression tag |
Ser 23 | - | expression tag |
Gly 24 | - | expression tag |
Leu 25 | - | expression tag |
Val 26 | - | expression tag |
Pro 27 | - | expression tag |
Arg 28 | - | expression tag |
Gly 29 | - | expression tag |
Ser 30 | - | expression tag |
His 31 | - | expression tag |
Met 32 | - | expression tag |
Leu 33 | - | expression tag |
Asp 34 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 340965.7 | |
Branched | Number of molecules | 10 |
Total formula weight | 6335.5 | |
Non-Polymers* | Number of molecules | 49 |
Total formula weight | 3834.7 | |
All* | Total formula weight | 351135.9 |