6Y5Y

Structure of New Jersey Polyomavirus VP1 in complex with 3'-Sialyllactose

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E... (A, B, C, D, E...)	VP1	polymer	311	34096.6	10	UniProt (A0A024B5J2) Pfam (PF00718)	New Jersey polyomavirus-2013
2	K, M, O, P (K, M, O, P)	N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose	branched		633.6	4	In PDB BIRD (PRD_900025) GlyTouCan (G92323ZH)		3'-sialyl-alpha-lactose
3	L, N, Q, R, S... (L, N, Q, R, S...)	N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose	branched		633.6	6	In PDB GlyTouCan (G91237TK)
4	AB, BA, BB, CA, CB... (G, B, H, C, I...)	GLYCEROL	non-polymer		92.1	39	Chemie (GOL)
5	AA, EB, GA, IB, LA... (A, G, B, H, D...)	MAGNESIUM ION	non-polymer		24.3	10	Chemie (MG)
6	AC, RB, SB, TB, UB... (J, A, B, C, D...)	water	water		18.0	2777	Chemie (HOH)

Sequence modifications

A, B, C, D, E, F, G, H, I, J: 35 - 322 (UniProt: A0A024B5J2)

PDB	External Database	Details
Met 12	-	initiating methionine
Gly 13	-	expression tag
Ser 14	-	expression tag
Ser 15	-	expression tag
His 16	-	expression tag
His 17	-	expression tag
His 18	-	expression tag
His 19	-	expression tag
His 20	-	expression tag
His 21	-	expression tag
Ser 22	-	expression tag
Ser 23	-	expression tag
Gly 24	-	expression tag
Leu 25	-	expression tag
Val 26	-	expression tag
Pro 27	-	expression tag
Arg 28	-	expression tag
Gly 29	-	expression tag
Ser 30	-	expression tag
His 31	-	expression tag
Met 32	-	expression tag
Leu 33	-	expression tag
Asp 34	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	10
	Total formula weight	340965.7
Branched	Number of molecules	10
	Total formula weight	6335.5
Non-Polymers*	Number of molecules	49
	Total formula weight	3834.7
All*	Total formula weight	351135.9

*Water molecules are not included.