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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6XZA

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A116S rRNApolymer1534497405.01Escherichia coli K-12
2B130S ribosomal protein S2polymer22424971.81UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS2
3C130S ribosomal protein S3polymer20623078.81UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS3
4D130S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS4
5E130S ribosomal protein S5polymer15516361.91UniProt (P0A7W1)
Pfam (PF03719)
Pfam (PF00333)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS5
6F130S ribosomal protein S6polymer10612326.31UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS6
7G130S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS7
8H130S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS8
9I130S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS9
10J130S ribosomal protein S10polymer9911325.11UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS10
11K130S ribosomal protein S11polymer11712487.21UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS11
12L130S ribosomal protein S12polymer12313683.11UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS12
13M130S ribosomal protein S13polymer11412625.81UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS13
14N130S ribosomal protein S14polymer10011475.41UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS14
15O130S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS15
16P130S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS16
17Q130S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS17
18R130S ribosomal protein S18polymer556466.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS18
19S130S ribosomal protein S19polymer799057.61UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS19
20T130S ribosomal protein S20polymer869577.31UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS20
21U130S ribosomal protein S21polymer566629.71UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS21
22A223S rRNApolymer2897939609.31Escherichia coli K-12
23B25S rRNApolymer12038790.11Escherichia coli K-12
24C250S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL2
25D250S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL3
26E250S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL4
27F250S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL5
28G250S ribosomal protein L6polymer17618801.61UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL6
29H250S ribosomal protein L10polymer13514568.71UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli K-1250S ribosomal protein L8,Large ribosomal subunit protein uL10
30I250S ribosomal protein L11polymer13414020.31UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli K-12
31J250S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL13
32K250S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL14
33L250S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL15
34M250S ribosomal protein L16polymer13615327.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL16
35N250S ribosomal protein L17polymer12514193.51UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli K-12
36O250S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL18
37P250S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL19
38Q250S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL20
39R250S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL21
40S250S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL22
41T250S ribosomal protein L23polymer9310546.51UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL23
42U250S ribosomal protein L24polymer10211078.91UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL24
43V250S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL25
44W250S ribosomal protein L27polymer768275.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL27
45X250S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL28
46Y250S ribosomal protein L29polymer627155.31UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL29
47Z250S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL30
48a250S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL32
49b250S ribosomal protein L33polymer515928.01UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL33
50c250S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL34
51d250S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL35,Ribosomal protein A
52e250S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL36-A,Ribosomal protein B
53f2Deacylated tRNAi(Met)polymer7624541.71Escherichia coli K-12
54A2Dirithromycinnon-polymer835.11Chemie (DI0)
Sequence modifications
H2: 2 - 136 (UniProt: P0A7J3)
PDBExternal DatabaseDetails
Val 85Ser 85conflict
Thr 86Met 86conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight2138909.1
Non-Polymers*Number of molecules1
Total formula weight835.1
All*Total formula weight2139744.2
*Water molecules are not included.

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PDB entries from 2024-07-24

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