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6XYW

Structure of the plant mitochondrial ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(Aa)
60S ribosomal protein L2, mitochondrialpolymer34937982.31UniProt (P93311)
Pfam (PF00181)
Arabidopsis thaliana (thale cress)
2B
(Ab)
Expressed proteinpolymer21422884.91UniProt (Q8VZU4)
Pfam (PF03947)
Arabidopsis thaliana (thale cress)Ribosomal protein L2 family
3C
(Ac)
50S ribosomal protein L3-2, mitochondrialpolymer32435457.01UniProt (Q9LRN8)
Pfam (PF00297)
Arabidopsis thaliana (thale cress)
4D
(AD)
Ribosomal protein L35polymer17320109.71UniProt (Q8LAA7)
Pfam (PF01632)
Arabidopsis thaliana (thale cress)
5E
(Ad)
50S ribosomal protein L4polymer30033315.51UniProt (Q8VY61)
Pfam (PF00573)
Arabidopsis thaliana (thale cress)Ribosomal protein L4/L1 family
6F
(Ae)
60S ribosomal protein L5, mitochondrialpolymer18521258.31UniProt (P42793)Arabidopsis thaliana (thale cress)
7G
(Af)
Putative ribosomal protein L6polymer10211612.81UniProt (Q9ZPX2)
Pfam (PF00347)
Arabidopsis thaliana (thale cress)Ribosomal protein L6 family protein
8H
(Ag)
Ribosomal protein L9/RNase H1polymer22125398.71UniProt (Q9LVU5)
Pfam (PF01281)
Pfam (PF03948)
Arabidopsis thaliana (thale cress)Similarity to ribosomal protein L9
9I
(Ai)
At4g35490polymer15516910.81UniProt (Q9SVW7)
Pfam (PF03946)
Pfam (PF00298)
Arabidopsis thaliana (thale cress)Mitochondrial ribosomal protein L11,Ribosomal protein L11 homolog,Ribosomal protein L11-like protein
10J
(Aj)
At1g01640polymer20523428.21UniProt (Q7XA68)
Pfam (PF00572)
Arabidopsis thaliana (thale cress)Ribosomal protein L13 family protein
11K
(Ak)
50S ribosomal protein HLP, mitochondrialpolymer17318601.81UniProt (Q93Z17)
Pfam (PF00238)
Arabidopsis thaliana (thale cress)Protein HUELLENLOS PARALOG
12L
(Al)
Ribosomal protein L18e/L15 superfamily proteinpolymer28131262.81UniProt (Q9FLF3)
Pfam (PF00828)
Arabidopsis thaliana (thale cress)
13M
(Am)
60S ribosomal protein L16, mitochondrialpolymer17920132.91UniProt (Q95747)
Pfam (PF00252)
Arabidopsis thaliana (thale cress)
14N
(An)
At5g09770polymer16018482.41UniProt (Q8LD39)
Pfam (PF01196)
Arabidopsis thaliana (thale cress)Ribosomal protein L17 family protein,Ribsomal protein-like
15O
(Ao)
At5g27820polymer11412762.21UniProt (Q8LDK5)
Pfam (PF00861)
Arabidopsis thaliana (thale cress)Ribosomal L18p/L5e family protein
16P
(Ap)
At1g24240/F3I6_17polymer22225113.31UniProt (O48691)
Pfam (PF01245)
Arabidopsis thaliana (thale cress)F3I6.17 protein,Ribosomal protein L19 family protein
17Q
(Aq)
50S ribosomal protein L20polymer12614754.21UniProt (Q8LCN1)
Pfam (PF00453)
Arabidopsis thaliana (thale cress)
18R
(Ar)
50S ribosomal protein L21, mitochondrialpolymer27030955.71UniProt (Q8L9A0)
Pfam (PF00829)
Arabidopsis thaliana (thale cress)Protein NUCLEAR FUSION DEFECTIVE 1
19S
(As)
AT1G52370 proteinpolymer26930211.91UniProt (Q56W16)
Pfam (PF00237)
Arabidopsis thaliana (thale cress)At1g52370,Chloroplast 50S ribosomal protein L22,Putative chloroplast 50S ribosomal protein L22,Ribosomal protein L22p/L17e family protein
20T
(At)
At4g39880polymer17819894.21UniProt (Q9SMR5)
Pfam (PF00276)
Arabidopsis thaliana (thale cress)Ribosomal protein L23/L15e family protein
21U
(Au)
50S ribosomal protein L24polymer15917531.41UniProt (Q9LT09)
Pfam (PF00467)
Pfam (PF17136)
Arabidopsis thaliana (thale cress)At5g23535,KOW domain-containing protein
22V
(Av)
Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing proteinpolymer24927376.71UniProt (Q9FKZ4)
Pfam (PF14693)
Arabidopsis thaliana (thale cress)
23W
(Aw)
50S ribosomal protein L27polymer15416709.31UniProt (Q9ZVX0)
Pfam (PF01016)
Arabidopsis thaliana (thale cress)At2g16930,Putative 50S ribosomal protein L27,Ribosomal protein L27 family protein
24X
(Ax)
AT4g31460/F3L17_30polymer21224112.61UniProt (Q9SV23)
Pfam (PF00830)
Arabidopsis thaliana (thale cress)Ribosomal L28 family
25Y
(Ay)
At1g07830/F24B9_7polymer14416913.61UniProt (Q94JQ7)
Pfam (PF06984)
Arabidopsis thaliana (thale cress)Ribosomal protein L29 family protein
26Z
(AA)
Ribosomal protein L31polymer768972.31UniProt (Q1G3G5)Arabidopsis thaliana (thale cress)
27AA
(AB)
At1g26740/T24P13_11polymer13414823.61UniProt (Q944L5)
Pfam (PF01783)
Arabidopsis thaliana (thale cress)Ribosomal L32p protein family
28BA
(AC)
At3g06320polymer586975.41UniProt (Q9SQT5)
Pfam (PF00471)
Arabidopsis thaliana (thale cress)At5g18790,Putative 50S ribosomal protein L33,Ribosomal protein L33 family protein,Ribosomal protein L33-like
29CA
(AE)
Ribosomal proteinpolymer10311452.41UniProt (Q8W464)
Pfam (PF00444)
Arabidopsis thaliana (thale cress)
30DA
(AF)
At4g05400polymer25027677.21UniProt (Q9M0V5)Arabidopsis thaliana (thale cress)Copper ion binding protein
31EA
(AG)
At5g40080polymer9410478.21UniProt (Q9LUJ9)
Pfam (PF09809)
Arabidopsis thaliana (thale cress)Mitochondrial ribosomal protein L27
32FA
(AH)
Mitochondrial ribosomal protein L51/S25/CI-B8 family proteinpolymer14616667.71UniProt (F4J9E4)
Pfam (PF05047)
Arabidopsis thaliana (thale cress)
33GA
(AI)
At1g14620/T5E21_15polymer23327178.31UniProt (Q8L7U3)Arabidopsis thaliana (thale cress)Decoy
34HA
(AJ)
39S ribosomal proteinpolymer12714456.51UniProt (Q940G3)
Pfam (PF10780)
Arabidopsis thaliana (thale cress)
35IA
(AK)
At4g22000polymer13015492.21UniProt (O65448)Arabidopsis thaliana (thale cress)Tyrosine sulfotransferase-like protein
36JA
(AL)
Uncharacterized protein At1g27435/F17L21.30polymer818780.11UniProt (Q94F28)Arabidopsis thaliana (thale cress)
37KA
(AM)
At1g73940/F2P9_19polymer15117112.21UniProt (Q9C9B5)Arabidopsis thaliana (thale cress)Tumor necrosis factor receptor family protein
38LA
(AN)
At3g51010polymer18821574.41UniProt (Q9SD44)Arabidopsis thaliana (thale cress)Protein translocase subunit
39MA
(AO)
Pentatricopeptide repeat-containing protein At1g60770polymer49155981.31UniProt (O22714)
Pfam (PF01535)
Arabidopsis thaliana (thale cress)
40NA
(AP)
rPPR*polymer66947569.41Arabidopsis thaliana (thale cress)
41OA
(AQ)
Pentatricopeptide repeat-containing protein PNM1, mitochondrialpolymer52159234.51UniProt (Q9FME4)
Pfam (PF13041)
Pfam (PF13812)
Arabidopsis thaliana (thale cress)PPR PROTEIN LOCALIZED TO THE NUCLEUS AND MITOCHONDRIA 1
42PA
(AR)
UNK-6polymer292079.31Arabidopsis thaliana (thale cress)
43QA
(1)
RNA (2842-MER)polymer2842918957.51Arabidopsis thaliana (thale cress)
44RA
(3)
RNA (118-MER)polymer11837992.61Arabidopsis thaliana (thale cress)
45SA
(Bb)
Ribosomal protein S3, mitochondrialpolymer55664998.61UniProt (Q95749)
Pfam (PF00189)
Arabidopsis thaliana (thale cress)
46TA
(Bf)
Ribosomal protein S7, mitochondrialpolymer14817235.21UniProt (P92557)
Pfam (PF00177)
Arabidopsis thaliana (thale cress)
47UA
(Bh)
30S ribosomal protein S9, mitochondrialpolymer43048058.71UniProt (Q8L6Z4)
Pfam (PF00380)
Arabidopsis thaliana (thale cress)
48VA
(Bi)
40S ribosomal protein S10, mitochondrialpolymer24127135.61UniProt (P42797)
Pfam (PF00338)
Arabidopsis thaliana (thale cress)
49WA
(Bl)
Small ribosomal subunit protein S13, mitochondrialpolymer15417311.11UniProt (Q9CA19)
Pfam (PF00416)
Arabidopsis thaliana (thale cress)mS13
50XA
(Bm)
At2g34520polymer16418778.91UniProt (Q9SMX4)
Pfam (PF00253)
Arabidopsis thaliana (thale cress)Mitochondrial ribosomal protein S14,Ribosomal protein S14
51YA
(Br)
40S ribosomal protein S19, mitochondrialpolymer21223675.21UniProt (P39697)
Pfam (PF00076)
Pfam (PF00203)
Arabidopsis thaliana (thale cress)
52ZA
(Bw)
Mitochondrial 28S ribosomal protein S29-like proteinpolymer48053863.51UniProt (Q8W4K2)
Pfam (PF10236)
Arabidopsis thaliana (thale cress)
53AB
(Bx)
37S ribosomal protein S27polymer10211558.61UniProt (Q8GXH5)
Pfam (PF08293)
Arabidopsis thaliana (thale cress)
54BB
(Bz)
AT3G18240 proteinpolymer41948126.01UniProt (Q9LJQ6)
Pfam (PF10213)
Arabidopsis thaliana (thale cress)AT3g18240,Ribosomal protein S24/S35
55CB
(BA)
CX9C domain-containing proteinpolymer9110532.51UniProt (Q1G3Z3)
Pfam (PF16860)
Arabidopsis thaliana (thale cress)
56DB
(Bt)
30S ribosomal protein S31, mitochondrialpolymer9810978.11UniProt (Q9SJU8)
Pfam (PF17067)
Arabidopsis thaliana (thale cress)
57EB
(BG)
Pentatricopeptide repeat-containing protein At3g02650, mitochondrialpolymer57663912.71UniProt (P0C896)
Pfam (PF01535)
Pfam (PF13041)
Arabidopsis thaliana (thale cress)
58FB
(BP)
UNK-5polymer916486.11Arabidopsis thaliana (thale cress)
59GB
(BF)
mS31/mS46polymer1238760.61Arabidopsis thaliana (thale cress)
60HB
(Ba)
Ribosomal protein S2, mitochondrialpolymer21924808.91UniProt (Q9GCB9)
Pfam (PF00318)
Arabidopsis thaliana (thale cress)
61IB
(Bc)
Ribosomal protein S4, mitochondrialpolymer36243477.41UniProt (Q31708)
Pfam (PF01479)
Arabidopsis thaliana (thale cress)
62JB
(Bd)
At1g64880polymer51560341.01UniProt (Q6GKU7)
Pfam (PF00333)
Pfam (PF03719)
Arabidopsis thaliana (thale cress)Ribosomal protein S5 family protein
63KB
(Be)
Translation elongation factor EF1B/ribosomal protein S6 family proteinpolymer13915991.51UniProt (Q9LSA1)
Pfam (PF01250)
Arabidopsis thaliana (thale cress)
64LB
(Bg)
40S ribosomal protein S15a-5polymer12914941.31UniProt (Q9M0E0)
Pfam (PF00410)
Arabidopsis thaliana (thale cress)
65MB
(Bj)
Probable ribosomal protein S11, mitochondrialpolymer31433977.11UniProt (Q8VZT8)
Pfam (PF00411)
Arabidopsis thaliana (thale cress)S11mt,Protein NUCLEAR FUSION DEFECTIVE 3,mitochondrial
66NB
(Bn)
At1g15810/F7H2_23polymer41947401.31UniProt (Q9LMQ3)
Pfam (PF00312)
Arabidopsis thaliana (thale cress)F7H2.15 protein,S15/NS1,RNA-binding protein
67OB
(Bo)
30S ribosomal protein S16-2, chloroplastic/mitochondrialpolymer13515126.41UniProt (Q9LTS6)
Pfam (PF00886)
Arabidopsis thaliana (thale cress)
68PB
(Bp)
Nucleic acid-binding, OB-fold-like proteinpolymer11612582.41UniProt (Q9XIA6)
Pfam (PF00366)
Arabidopsis thaliana (thale cress)Putative 40S ribosomal protein S17,Putative ribosomal protein
69QB
(Bq)
F10K1.8 proteinpolymer26129657.51UniProt (Q9LML3)
Pfam (PF01084)
Arabidopsis thaliana (thale cress)Ribosomal protein S18
70RB
(Bs)
Ribosomal protein S21 family proteinpolymer10111673.91UniProt (F4JCI2)
Pfam (PF01165)
Arabidopsis thaliana (thale cress)
71SB
(Bu)
Uncharacterized proteinpolymer19522084.51UniProt (F4HPB7)Arabidopsis thaliana (thale cress)
72TB
(Bv)
AT5g49210/K21P3_8polymer19523553.01UniProt (Q945P2)Arabidopsis thaliana (thale cress)Stress response NST1-like protein
73UB
(By)
28S ribosomal S34 proteinpolymer14215793.31UniProt (Q9FHC3)
Pfam (PF16053)
Arabidopsis thaliana (thale cress)
74VB
(BB)
mS38polymer13715934.41Arabidopsis thaliana (thale cress)
75WB
(BC)
At5g26800polymer11212624.01UniProt (Q6IDB8)
Pfam (PF09597)
Arabidopsis thaliana (thale cress)Xaa-pro aminopeptidase P
76XB
(BD)
Gb|AAC32909.1polymer42048396.71UniProt (Q9LVA9)
Pfam (PF12298)
Arabidopsis thaliana (thale cress)Ribosomal protein L20
77YB
(BE)
3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrialpolymer40945548.71UniProt (Q8RXN4)
Pfam (PF16113)
Arabidopsis thaliana (thale cress)
78ZB
(BI)
rPPR*polymer26618924.71Arabidopsis thaliana (thale cress)
79AC
(BJ)
rPPR*polymer34924824.31Arabidopsis thaliana (thale cress)
80BC
(BH)
Adenylyl cyclasepolymer39043971.31UniProt (Q1JPP0)Arabidopsis thaliana (thale cress)At4g15640
81CC
(BN)
UNK-3polymer694922.41Arabidopsis thaliana (thale cress)
82DC
(BM)
UNK-2polymer795633.21Arabidopsis thaliana (thale cress)
83EC
(BO)
UNK-4polymer302150.31Arabidopsis thaliana (thale cress)
84FC
(BL)
UNK-1polymer644567.01Arabidopsis thaliana (thale cress)
85GC
(2)
RNA (1743-MER)polymer1743564635.21Arabidopsis thaliana (thale cress)
86HC
(Az)
At5g55140polymer10912381.31UniProt (Q8L908)
Pfam (PF00327)
Arabidopsis thaliana (thale cress)Ribosomal protein L30 family protein
87IC
(Ah)
50S ribosomal protein L10polymer17119125.21UniProt (Q9LHH1)
Pfam (PF00466)
Arabidopsis thaliana (thale cress)50S ribosomal protein L10,putative,putative; 89815-90330,At3g12370,Ribosomal protein L10 family protein
88JC
(BK)
rPPR*polymer31622478.71Arabidopsis thaliana (thale cress)
89KC
(Bk)
Ribosomal protein S12, mitochondrialpolymer12514283.81UniProt (P92532)
Pfam (PF00164)
Arabidopsis thaliana (thale cress)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains89
Total formula weight3559850.0
All*Total formula weight3559850.0
*Water molecules are not included.

247947

PDB entries from 2026-01-21

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