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6XYW

Structure of the plant mitochondrial ribosome

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
AA0003674molecular_functionmolecular_function
AA0005840cellular_componentribosome
AA0008150biological_processbiological_process
AA0009536cellular_componentplastid
AA1990904cellular_componentribonucleoprotein complex
AB0003735molecular_functionstructural constituent of ribosome
AB0005739cellular_componentmitochondrion
AB0005840cellular_componentribosome
AB0006412biological_processtranslation
AB0015934cellular_componentlarge ribosomal subunit
AB1990904cellular_componentribonucleoprotein complex
AC0003674molecular_functionmolecular_function
AC0003735molecular_functionstructural constituent of ribosome
AC0005840cellular_componentribosome
AC0006412biological_processtranslation
AC1990904cellular_componentribonucleoprotein complex
AD0003735molecular_functionstructural constituent of ribosome
AD0005840cellular_componentribosome
AD0006412biological_processtranslation
AD1990904cellular_componentribonucleoprotein complex
AE0003735molecular_functionstructural constituent of ribosome
AE0005840cellular_componentribosome
AE0006412biological_processtranslation
AE1990904cellular_componentribonucleoprotein complex
AF0005507molecular_functioncopper ion binding
AF0005739cellular_componentmitochondrion
AF0005762cellular_componentmitochondrial large ribosomal subunit
AF0005829cellular_componentcytosol
AF0008150biological_processbiological_process
AG0003735molecular_functionstructural constituent of ribosome
AG0005739cellular_componentmitochondrion
AG0005762cellular_componentmitochondrial large ribosomal subunit
AG0005840cellular_componentribosome
AG0009536cellular_componentplastid
AG1990904cellular_componentribonucleoprotein complex
AH0003735molecular_functionstructural constituent of ribosome
AH0005739cellular_componentmitochondrion
AH0005840cellular_componentribosome
AH0032543biological_processmitochondrial translation
AH1990904cellular_componentribonucleoprotein complex
AI0003735molecular_functionstructural constituent of ribosome
AI0005739cellular_componentmitochondrion
AJ0005739cellular_componentmitochondrion
AJ0005840cellular_componentribosome
AJ0008150biological_processbiological_process
AJ1990904cellular_componentribonucleoprotein complex
AK0003674molecular_functionmolecular_function
AK0005575cellular_componentcellular_component
AL0008150biological_processbiological_process
AM0003729molecular_functionmRNA binding
AM0005575cellular_componentcellular_component
AM0008150biological_processbiological_process
AN0005739cellular_componentmitochondrion
AO0003729molecular_functionmRNA binding
AO0005739cellular_componentmitochondrion
AO0005840cellular_componentribosome
AO1990904cellular_componentribonucleoprotein complex
AQ0003723molecular_functionRNA binding
AQ0003729molecular_functionmRNA binding
AQ0005515molecular_functionprotein binding
AQ0005634cellular_componentnucleus
AQ0005739cellular_componentmitochondrion
AQ0005759cellular_componentmitochondrial matrix
AQ0005840cellular_componentribosome
AQ0006417biological_processregulation of translation
AQ1990904cellular_componentribonucleoprotein complex
Aa0003729molecular_functionmRNA binding
Aa0003735molecular_functionstructural constituent of ribosome
Aa0005739cellular_componentmitochondrion
Aa0005762cellular_componentmitochondrial large ribosomal subunit
Aa0005840cellular_componentribosome
Aa0006412biological_processtranslation
Aa1990904cellular_componentribonucleoprotein complex
Ab0003735molecular_functionstructural constituent of ribosome
Ab0005739cellular_componentmitochondrion
Ab0005840cellular_componentribosome
Ab0006412biological_processtranslation
Ab1990904cellular_componentribonucleoprotein complex
Ac0003729molecular_functionmRNA binding
Ac0003735molecular_functionstructural constituent of ribosome
Ac0005739cellular_componentmitochondrion
Ac0005840cellular_componentribosome
Ac0006412biological_processtranslation
Ac0019843molecular_functionrRNA binding
Ac1990904cellular_componentribonucleoprotein complex
Ad0003729molecular_functionmRNA binding
Ad0003735molecular_functionstructural constituent of ribosome
Ad0005840cellular_componentribosome
Ad0006412biological_processtranslation
Ad1990904cellular_componentribonucleoprotein complex
Ae0003723molecular_functionRNA binding
Ae0003735molecular_functionstructural constituent of ribosome
Ae0005739cellular_componentmitochondrion
Ae0005840cellular_componentribosome
Ae0006412biological_processtranslation
Ae0022625cellular_componentcytosolic large ribosomal subunit
Ae1990904cellular_componentribonucleoprotein complex
Af0003735molecular_functionstructural constituent of ribosome
Af0005840cellular_componentribosome
Af0006412biological_processtranslation
Af0019843molecular_functionrRNA binding
Af1990904cellular_componentribonucleoprotein complex
Ag0003735molecular_functionstructural constituent of ribosome
Ag0005840cellular_componentribosome
Ag0006412biological_processtranslation
Ag0019843molecular_functionrRNA binding
Ag1990904cellular_componentribonucleoprotein complex
Ah0005840cellular_componentribosome
Ah1990904cellular_componentribonucleoprotein complex
Ai0003735molecular_functionstructural constituent of ribosome
Ai0005840cellular_componentribosome
Ai0006412biological_processtranslation
Ai1990904cellular_componentribonucleoprotein complex
Aj0003735molecular_functionstructural constituent of ribosome
Aj0005737cellular_componentcytoplasm
Aj0005840cellular_componentribosome
Aj0006412biological_processtranslation
Aj1990904cellular_componentribonucleoprotein complex
Ak0003735molecular_functionstructural constituent of ribosome
Ak0005739cellular_componentmitochondrion
Ak0005840cellular_componentribosome
Ak0006412biological_processtranslation
Ak0015934cellular_componentlarge ribosomal subunit
Ak0019843molecular_functionrRNA binding
Ak1990904cellular_componentribonucleoprotein complex
Al0003729molecular_functionmRNA binding
Al0003735molecular_functionstructural constituent of ribosome
Al0005840cellular_componentribosome
Al0006412biological_processtranslation
Al0015934cellular_componentlarge ribosomal subunit
Al1990904cellular_componentribonucleoprotein complex
Am0003735molecular_functionstructural constituent of ribosome
Am0005739cellular_componentmitochondrion
Am0005762cellular_componentmitochondrial large ribosomal subunit
Am0005840cellular_componentribosome
Am0006412biological_processtranslation
Am0019843molecular_functionrRNA binding
Am0032543biological_processmitochondrial translation
Am1990904cellular_componentribonucleoprotein complex
An0003735molecular_functionstructural constituent of ribosome
An0005840cellular_componentribosome
An0006412biological_processtranslation
An1990904cellular_componentribonucleoprotein complex
Ao0003735molecular_functionstructural constituent of ribosome
Ao0005840cellular_componentribosome
Ao0006412biological_processtranslation
Ao1990904cellular_componentribonucleoprotein complex
Ap0003735molecular_functionstructural constituent of ribosome
Ap0005840cellular_componentribosome
Ap0006412biological_processtranslation
Ap1990904cellular_componentribonucleoprotein complex
Aq0003735molecular_functionstructural constituent of ribosome
Aq0005840cellular_componentribosome
Aq0006412biological_processtranslation
Aq0009536cellular_componentplastid
Aq0019843molecular_functionrRNA binding
Aq1990904cellular_componentribonucleoprotein complex
Ar0000741biological_processkaryogamy
Ar0000976molecular_functiontranscription cis-regulatory region binding
Ar0003723molecular_functionRNA binding
Ar0003735molecular_functionstructural constituent of ribosome
Ar0005737cellular_componentcytoplasm
Ar0005739cellular_componentmitochondrion
Ar0005840cellular_componentribosome
Ar0005886cellular_componentplasma membrane
Ar0006412biological_processtranslation
Ar0009553biological_processembryo sac development
Ar0009555biological_processpollen development
Ar0009567biological_processdouble fertilization forming a zygote and endosperm
Ar0010197biological_processpolar nucleus fusion
Ar0019843molecular_functionrRNA binding
Ar1990904cellular_componentribonucleoprotein complex
As0003735molecular_functionstructural constituent of ribosome
As0005739cellular_componentmitochondrion
As0005840cellular_componentribosome
As0006412biological_processtranslation
As0015934cellular_componentlarge ribosomal subunit
As1990904cellular_componentribonucleoprotein complex
At0003729molecular_functionmRNA binding
At0003735molecular_functionstructural constituent of ribosome
At0005739cellular_componentmitochondrion
At0005840cellular_componentribosome
At0006412biological_processtranslation
At1990904cellular_componentribonucleoprotein complex
Au0003723molecular_functionRNA binding
Au0003735molecular_functionstructural constituent of ribosome
Au0005840cellular_componentribosome
Au0006412biological_processtranslation
Au1990904cellular_componentribonucleoprotein complex
Av0003729molecular_functionmRNA binding
Av0003735molecular_functionstructural constituent of ribosome
Av0005739cellular_componentmitochondrion
Av0005840cellular_componentribosome
Av0006412biological_processtranslation
Av0009536cellular_componentplastid
Aw0003735molecular_functionstructural constituent of ribosome
Aw0005840cellular_componentribosome
Aw0006412biological_processtranslation
Ax0003729molecular_functionmRNA binding
Ax0003735molecular_functionstructural constituent of ribosome
Ax0005840cellular_componentribosome
Ax1990904cellular_componentribonucleoprotein complex
Ay0003735molecular_functionstructural constituent of ribosome
Ay0005739cellular_componentmitochondrion
Ay0005761cellular_componentmitochondrial ribosome
Ay0005840cellular_componentribosome
Ay0006412biological_processtranslation
Ay1990904cellular_componentribonucleoprotein complex
Az0003735molecular_functionstructural constituent of ribosome
Az0005840cellular_componentribosome
Az0006412biological_processtranslation
Az0015934cellular_componentlarge ribosomal subunit
Az1990904cellular_componentribonucleoprotein complex
BA0003735molecular_functionstructural constituent of ribosome
BA0005739cellular_componentmitochondrion
BA0032543biological_processmitochondrial translation
BC0003674molecular_functionmolecular_function
BC0004177molecular_functionaminopeptidase activity
BD0005739cellular_componentmitochondrion
BD0005840cellular_componentribosome
BD0007006biological_processmitochondrial membrane organization
BD0007033biological_processvacuole organization
BD0007154biological_processcell communication
BD0009555biological_processpollen development
BD0009793biological_processembryo development ending in seed dormancy
BD0009846biological_processpollen germination
BD0009960biological_processendosperm development
BD0010342biological_processendosperm cellularization
BD0010468biological_processregulation of gene expression
BD0010581biological_processregulation of starch biosynthetic process
BD0043067biological_processregulation of programmed cell death
BD0048229biological_processgametophyte development
BD0048868biological_processpollen tube development
BD0051647biological_processnucleus localization
BD1990904cellular_componentribonucleoprotein complex
BE0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity
BE0005739cellular_componentmitochondrion
BE0005840cellular_componentribosome
BE0016787molecular_functionhydrolase activity
BE1990904cellular_componentribonucleoprotein complex
BF0050825molecular_functionice binding
BG0003729molecular_functionmRNA binding
BG0005739cellular_componentmitochondrion
BG0005840cellular_componentribosome
BG1990904cellular_componentribonucleoprotein complex
BH0003729molecular_functionmRNA binding
BH0005739cellular_componentmitochondrion
BH0008150biological_processbiological_process
BI0050825molecular_functionice binding
BJ0050825molecular_functionice binding
BK0050825molecular_functionice binding
BL0050825molecular_functionice binding
BM0050825molecular_functionice binding
BN0050825molecular_functionice binding
BO0050825molecular_functionice binding
BP0050825molecular_functionice binding
Ba0003735molecular_functionstructural constituent of ribosome
Ba0005739cellular_componentmitochondrion
Ba0005763cellular_componentmitochondrial small ribosomal subunit
Ba0005840cellular_componentribosome
Ba0006412biological_processtranslation
Ba0015935cellular_componentsmall ribosomal subunit
Ba1990904cellular_componentribonucleoprotein complex
Bb0003723molecular_functionRNA binding
Bb0003735molecular_functionstructural constituent of ribosome
Bb0005739cellular_componentmitochondrion
Bb0005840cellular_componentribosome
Bb0006412biological_processtranslation
Bb1990904cellular_componentribonucleoprotein complex
Bc0003723molecular_functionRNA binding
Bc0003735molecular_functionstructural constituent of ribosome
Bc0005739cellular_componentmitochondrion
Bc0005840cellular_componentribosome
Bc0015935cellular_componentsmall ribosomal subunit
Bc0019843molecular_functionrRNA binding
Bc0042274biological_processribosomal small subunit biogenesis
Bc1990904cellular_componentribonucleoprotein complex
Bd0003723molecular_functionRNA binding
Bd0003735molecular_functionstructural constituent of ribosome
Bd0005768cellular_componentendosome
Bd0005794cellular_componentGolgi apparatus
Bd0005802cellular_componenttrans-Golgi network
Bd0005840cellular_componentribosome
Bd0006412biological_processtranslation
Bd1990904cellular_componentribonucleoprotein complex
Be0003735molecular_functionstructural constituent of ribosome
Be0003746molecular_functiontranslation elongation factor activity
Be0005737cellular_componentcytoplasm
Be0005840cellular_componentribosome
Be0006412biological_processtranslation
Be0006414biological_processtranslational elongation
Be0019843molecular_functionrRNA binding
Bf0003729molecular_functionmRNA binding
Bf0003735molecular_functionstructural constituent of ribosome
Bf0005739cellular_componentmitochondrion
Bf0005763cellular_componentmitochondrial small ribosomal subunit
Bf0005840cellular_componentribosome
Bf0006412biological_processtranslation
Bf0015935cellular_componentsmall ribosomal subunit
Bf0019843molecular_functionrRNA binding
Bf1990904cellular_componentribonucleoprotein complex
Bg0000325cellular_componentplant-type vacuole
Bg0003735molecular_functionstructural constituent of ribosome
Bg0005739cellular_componentmitochondrion
Bg0005840cellular_componentribosome
Bg0006412biological_processtranslation
Bg0022626cellular_componentcytosolic ribosome
Bg0022627cellular_componentcytosolic small ribosomal subunit
Bg1990904cellular_componentribonucleoprotein complex
Bh0003735molecular_functionstructural constituent of ribosome
Bh0005515molecular_functionprotein binding
Bh0005739cellular_componentmitochondrion
Bh0005829cellular_componentcytosol
Bh0005840cellular_componentribosome
Bh0006412biological_processtranslation
Bh0009555biological_processpollen development
Bh0009559biological_processembryo sac central cell differentiation
Bh0048229biological_processgametophyte development
Bh1990904cellular_componentribonucleoprotein complex
Bi0003729molecular_functionmRNA binding
Bi0003735molecular_functionstructural constituent of ribosome
Bi0005739cellular_componentmitochondrion
Bi0005763cellular_componentmitochondrial small ribosomal subunit
Bi0005840cellular_componentribosome
Bi0006412biological_processtranslation
Bi1990904cellular_componentribonucleoprotein complex
Bj0000741biological_processkaryogamy
Bj0003735molecular_functionstructural constituent of ribosome
Bj0005739cellular_componentmitochondrion
Bj0005840cellular_componentribosome
Bj0006412biological_processtranslation
Bj0010197biological_processpolar nucleus fusion
Bj0019843molecular_functionrRNA binding
Bj1990904cellular_componentribonucleoprotein complex
Bk0003735molecular_functionstructural constituent of ribosome
Bk0005739cellular_componentmitochondrion
Bk0005840cellular_componentribosome
Bk0006412biological_processtranslation
Bk0015935cellular_componentsmall ribosomal subunit
Bk1990904cellular_componentribonucleoprotein complex
Bl0003676molecular_functionnucleic acid binding
Bl0003723molecular_functionRNA binding
Bl0003735molecular_functionstructural constituent of ribosome
Bl0005739cellular_componentmitochondrion
Bl0005763cellular_componentmitochondrial small ribosomal subunit
Bl0005840cellular_componentribosome
Bl0006412biological_processtranslation
Bl0009507cellular_componentchloroplast
Bl0019843molecular_functionrRNA binding
Bl1990904cellular_componentribonucleoprotein complex
Bm0003735molecular_functionstructural constituent of ribosome
Bm0005739cellular_componentmitochondrion
Bm0005840cellular_componentribosome
Bm0006412biological_processtranslation
Bm1990904cellular_componentribonucleoprotein complex
Bn0003729molecular_functionmRNA binding
Bn0003735molecular_functionstructural constituent of ribosome
Bn0005737cellular_componentcytoplasm
Bn0005840cellular_componentribosome
Bn0006412biological_processtranslation
Bn1990904cellular_componentribonucleoprotein complex
Bo0003735molecular_functionstructural constituent of ribosome
Bo0005737cellular_componentcytoplasm
Bo0005739cellular_componentmitochondrion
Bo0005840cellular_componentribosome
Bo0006412biological_processtranslation
Bo0009507cellular_componentchloroplast
Bo0009536cellular_componentplastid
Bo1990904cellular_componentribonucleoprotein complex
Bp0003735molecular_functionstructural constituent of ribosome
Bp0005840cellular_componentribosome
Bp0006412biological_processtranslation
Bp0019843molecular_functionrRNA binding
Bp1990904cellular_componentribonucleoprotein complex
Bq0003729molecular_functionmRNA binding
Bq0003735molecular_functionstructural constituent of ribosome
Bq0005515molecular_functionprotein binding
Bq0005840cellular_componentribosome
Bq0006412biological_processtranslation
Bq0019843molecular_functionrRNA binding
Bq1990904cellular_componentribonucleoprotein complex
Br0003676molecular_functionnucleic acid binding
Br0003723molecular_functionRNA binding
Br0003729molecular_functionmRNA binding
Br0003735molecular_functionstructural constituent of ribosome
Br0005737cellular_componentcytoplasm
Br0005739cellular_componentmitochondrion
Br0005763cellular_componentmitochondrial small ribosomal subunit
Br0005840cellular_componentribosome
Br0006412biological_processtranslation
Br0015935cellular_componentsmall ribosomal subunit
Br1990904cellular_componentribonucleoprotein complex
Bs0003735molecular_functionstructural constituent of ribosome
Bs0005840cellular_componentribosome
Bs0006412biological_processtranslation
Bs1990904cellular_componentribonucleoprotein complex
Bt0003674molecular_functionmolecular_function
Bt0005739cellular_componentmitochondrion
Bt0005840cellular_componentribosome
Bt1990904cellular_componentribonucleoprotein complex
Bu0005575cellular_componentcellular_component
Bu0008150biological_processbiological_process
Bv0005515molecular_functionprotein binding
Bw0005739cellular_componentmitochondrion
Bw0005840cellular_componentribosome
Bw1990904cellular_componentribonucleoprotein complex
Bx0005739cellular_componentmitochondrion
Bx0005840cellular_componentribosome
Bx0008150biological_processbiological_process
Bx1990904cellular_componentribonucleoprotein complex
By0003735molecular_functionstructural constituent of ribosome
By0005739cellular_componentmitochondrion
By0008150biological_processbiological_process
By0009409biological_processresponse to cold
Bz0003735molecular_functionstructural constituent of ribosome
Bz0005739cellular_componentmitochondrion
Bz0005829cellular_componentcytosol
Bz0005840cellular_componentribosome
Bz0032543biological_processmitochondrial translation
Functional Information from PROSITE/UniProt
site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. GVVVraamqrgrv.DGsevrFddNavVL
ChainResidueDetails
AkGLY104-LEU130

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. KlLikkLVnfrmkeGKRtrvraIVyqT
ChainResidueDetails
BfLYS9-THR35

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GyvVITTPdGILdheeAI
ChainResidueDetails
BgGLY99-ILE116

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
BkLYS43-ARG50

site_idPS00099
Number of Residues14
DetailsTHIOLASE_3 Thiolases active site. GLVALCRArAsAsS
ChainResidueDetails
AbGLY3-SER16

site_idPS00216
Number of Residues16
DetailsSUGAR_TRANSPORT_1 Sugar transport proteins signature 1. VSFFVDYFGRRkdfk..G
ChainResidueDetails
AQVAL146-GLY161

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKthvrckItegkVGhkFGEFafT
ChainResidueDetails
BrASN178-THR202

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGttGQvgAiqlGiSRAL
ChainResidueDetails
BhGLY369-LEU387

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PkvRGVAmNPcD
ChainResidueDetails
AbPRO152-ASP163

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FvpgqyvDvtGiTrGKGfqGcmkR
ChainResidueDetails
AcPHE176-ARG199

site_idPS00525
Number of Residues9
DetailsRIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGI
ChainResidueDetails
AfPRO78-ILE86

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvftgrsrsvtelFRVSRiVFR
ChainResidueDetails
BmARG126-ARG148

site_idPS00586
Number of Residues12
DetailsRIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. RRnGKIWVRVFA
ChainResidueDetails
AmARG103-ALA114

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGsRHrhGlpCRGQ
ChainResidueDetails
BlARG116-GLN129

site_idPS00701
Number of Residues12
DetailsRIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGrGKGnptgW
ChainResidueDetails
AmARG126-TRP137

site_idPS00828
Number of Residues27
DetailsRIBOSOMAL_L36 Ribosomal protein L36 signature. CefCktVkRrgrVyViCssnpKHkQrQ
ChainResidueDetails
AECYS11-GLN37

site_idPS00831
Number of Residues15
DetailsRIBOSOMAL_L27 Ribosomal protein L27 signature. GnIIvRQRGtrfhpG
ChainResidueDetails
AwGLY79-GLY93

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. IqKLLNTGAHLG
ChainResidueDetails
BaILE8-GLY19

site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. GDnVmIIrGkdKGet.GtI
ChainResidueDetails
AuGLY18-ILE35

site_idPS01169
Number of Residues23
DetailsRIBOSOMAL_L21 Ribosomal protein L21 signature. VlifKkkrRKnyrrtrGHRQelT
ChainResidueDetails
ArVAL212-THR234

226707

PDB entries from 2024-10-30

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