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6XT1

The structure of the M60 catalytic domain from Clostridium perfringens ZmpC in complex the sialyl T antigen

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
ZmpC Glycopeptidasepolymer53160238.44UniProt (F8UNJ8)
Pfam (PF13402)
Clostridium perfringensF5/8 type C domain-containing protein
2E, F
(F, M)
beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranosebranched674.62In PDB
GlyTouCan (G56682BC)
3G, K, Q, X
(A, B, C, D)
ZINC IONnon-polymer65.44Chemie (ZN)
4AA, BA, H, I, L...
(D, A, B, C)
1,2-ETHANEDIOLnon-polymer62.116Chemie (EDO)
5J, P
(A, B)
SERINEnon-polymer105.12Chemie (SER)
6CA, DA, EA, FA
(A, B, C, D)
waterwater18.0515Chemie (HOH)
Sequence modifications
A, B, C, D: 492 - 999 (UniProt: F8UNJ8)
PDBExternal DatabaseDetails
Met 469-initiating methionine
Gly 470-expression tag
Ser 471-expression tag
Ser 472-expression tag
His 473-expression tag
His 474-expression tag
His 475-expression tag
His 476-expression tag
His 477-expression tag
His 478-expression tag
Ser 479-expression tag
Ser 480-expression tag
Gly 481-expression tag
Leu 482-expression tag
Val 483-expression tag
Pro 484-expression tag
Arg 485-expression tag
Gly 486-expression tag
Ser 487-expression tag
His 488-expression tag
Met 489-expression tag
Ala 490-expression tag
Ser 491-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight240953.6
BranchedNumber of molecules2
Total formula weight1349.2
Non-Polymers*Number of molecules22
Total formula weight1464.9
All*Total formula weight243767.7
*Water molecules are not included.

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PDB entries from 2025-07-02

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