6XS9
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Vacuolar protein sorting-associated protein 29 | polymer | 192 | 21636.9 | 1 | UniProt (Q9UBQ0) Pfam (PF12850) In PDB | Homo sapiens (Human) | hVPS29,PEP11 homolog,Vesicle protein sorting 29 |
2 | B | Vacuolar protein sorting-associated protein 29 | polymer | 192 | 21652.9 | 1 | UniProt (Q9UBQ0) Pfam (PF12850) In PDB | Homo sapiens (Human) | hVPS29,PEP11 homolog,Vesicle protein sorting 29 |
3 | C, D, E, F | 48V-TYR-ILE-LYS-THR-PRO-LEU-GLY-THR-PHE-PRO-ASN-ARG-HIS-GLY | polymer | 15 | 1764.0 | 4 | synthetic construct | ||
4 | A | MALONATE ION | non-polymer | 102.0 | 2 | Chemie (MLI) | |||
5 | A, B, F | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
6 | B | 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE | non-polymer | 264.3 | 1 | Chemie (O4B) | |||
7 | water | water | 18.0 | 32 | Chemie (HOH) |
Sequence modifications
A: 1 - 182 (UniProt: Q9UBQ0)
B: 1 - 182 (UniProt: Q9UBQ0)
PDB | External Database | Details |
---|---|---|
Gly -9 | - | expression tag |
Ser -8 | - | expression tag |
Pro -7 | - | expression tag |
Glu -6 | - | expression tag |
Phe -5 | - | expression tag |
Gly -4 | - | expression tag |
Thr -3 | - | expression tag |
Arg -2 | - | expression tag |
Asp -1 | - | expression tag |
Arg 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -9 | - | expression tag |
Ser -8 | - | expression tag |
Pro -7 | - | expression tag |
Glu -6 | - | expression tag |
Phe -5 | - | expression tag |
Gly -4 | - | expression tag |
Thr -3 | - | expression tag |
Arg -2 | - | expression tag |
Asp -1 | - | expression tag |
Arg 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 50345.9 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 836.8 | |
All* | Total formula weight | 51182.7 |