6WXF
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (1, 2, 3) | Outer capsid protein VP4 | polymer | 776 | 86703.7 | 3 | UniProt (G0YZG6) Pfam (PF00426) Pfam (PF17477) Pfam (PF17478) | Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]) (RV-A) | Hemagglutinin |
| 2 | D, E, F, G, H... (A, B, C, D, E...) | Intermediate capsid protein VP6 | polymer | 397 | 44934.8 | 18 | UniProt (B2BN53) Pfam (PF00980) | Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]) (RV-A) | |
| 3 | AA, BA, CA, DA, EA... (a, b, c, d, e...) | Outer capsid glycoprotein VP7 | polymer | 326 | 37136.5 | 18 | UniProt (P12476) Pfam (PF00434) | Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]) (RV-A) | |
| 4 | BC, DB, FD, HC, JB... (k, e, r, l, f...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 18 | Chemie (NAG) | |||
| 5 | AB, AC, AD, BB, BD... (d, j, q, k, r...) | CALCIUM ION | non-polymer | 40.1 | 54 | Chemie (CA) |
Sequence modifications
1, 2, 3: 1 - 776 (UniProt: G0YZG6)
| PDB | External Database | Details |
|---|---|---|
| Cys 567 | Ser 567 | engineered mutation |
| Cys 590 | Ala 590 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 39 |
| Total formula weight | 1737394.5 | |
| Non-Polymers* | Number of molecules | 72 |
| Total formula weight | 6146.0 | |
| All* | Total formula weight | 1743540.4 |
