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6WXF

Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
10016020cellular_componentmembrane
10019028cellular_componentviral capsid
10019058biological_processviral life cycle
10019062biological_processvirion attachment to host cell
10020002cellular_componenthost cell plasma membrane
10030430cellular_componenthost cell cytoplasm
10039624cellular_componentviral outer capsid
10039665biological_processpermeabilization of host organelle membrane involved in viral entry into host cell
10044163cellular_componenthost cytoskeleton
10044165cellular_componenthost cell endoplasmic reticulum
10044168cellular_componenthost cell rough endoplasmic reticulum
10044172cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment
10046718biological_processsymbiont entry into host cell
10140267biological_processsymbiont entry into host cell via permeabilization of host membrane
20016020cellular_componentmembrane
20019028cellular_componentviral capsid
20019058biological_processviral life cycle
20019062biological_processvirion attachment to host cell
20020002cellular_componenthost cell plasma membrane
20030430cellular_componenthost cell cytoplasm
20039624cellular_componentviral outer capsid
20039665biological_processpermeabilization of host organelle membrane involved in viral entry into host cell
20044163cellular_componenthost cytoskeleton
20044165cellular_componenthost cell endoplasmic reticulum
20044168cellular_componenthost cell rough endoplasmic reticulum
20044172cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment
20046718biological_processsymbiont entry into host cell
20140267biological_processsymbiont entry into host cell via permeabilization of host membrane
30016020cellular_componentmembrane
30019028cellular_componentviral capsid
30019058biological_processviral life cycle
30019062biological_processvirion attachment to host cell
30020002cellular_componenthost cell plasma membrane
30030430cellular_componenthost cell cytoplasm
30039624cellular_componentviral outer capsid
30039665biological_processpermeabilization of host organelle membrane involved in viral entry into host cell
30044163cellular_componenthost cytoskeleton
30044165cellular_componenthost cell endoplasmic reticulum
30044168cellular_componenthost cell rough endoplasmic reticulum
30044172cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment
30046718biological_processsymbiont entry into host cell
30140267biological_processsymbiont entry into host cell via permeabilization of host membrane
a0019028cellular_componentviral capsid
A0005198molecular_functionstructural molecule activity
A0019028cellular_componentviral capsid
A0019031cellular_componentviral envelope
A0019064biological_processfusion of virus membrane with host plasma membrane
A0039621cellular_componentT=13 icosahedral viral capsid
A0039626cellular_componentviral intermediate capsid
A0044650biological_processadhesion of symbiont to host cell
A0046789molecular_functionhost cell surface receptor binding
A0046872molecular_functionmetal ion binding
b0019028cellular_componentviral capsid
B0005198molecular_functionstructural molecule activity
B0019028cellular_componentviral capsid
B0019031cellular_componentviral envelope
B0019064biological_processfusion of virus membrane with host plasma membrane
B0039621cellular_componentT=13 icosahedral viral capsid
B0039626cellular_componentviral intermediate capsid
B0044650biological_processadhesion of symbiont to host cell
B0046789molecular_functionhost cell surface receptor binding
B0046872molecular_functionmetal ion binding
c0019028cellular_componentviral capsid
C0005198molecular_functionstructural molecule activity
C0019028cellular_componentviral capsid
C0019031cellular_componentviral envelope
C0019064biological_processfusion of virus membrane with host plasma membrane
C0039621cellular_componentT=13 icosahedral viral capsid
C0039626cellular_componentviral intermediate capsid
C0044650biological_processadhesion of symbiont to host cell
C0046789molecular_functionhost cell surface receptor binding
C0046872molecular_functionmetal ion binding
d0019028cellular_componentviral capsid
D0005198molecular_functionstructural molecule activity
D0019028cellular_componentviral capsid
D0019031cellular_componentviral envelope
D0019064biological_processfusion of virus membrane with host plasma membrane
D0039621cellular_componentT=13 icosahedral viral capsid
D0039626cellular_componentviral intermediate capsid
D0044650biological_processadhesion of symbiont to host cell
D0046789molecular_functionhost cell surface receptor binding
D0046872molecular_functionmetal ion binding
e0019028cellular_componentviral capsid
E0005198molecular_functionstructural molecule activity
E0019028cellular_componentviral capsid
E0019031cellular_componentviral envelope
E0019064biological_processfusion of virus membrane with host plasma membrane
E0039621cellular_componentT=13 icosahedral viral capsid
E0039626cellular_componentviral intermediate capsid
E0044650biological_processadhesion of symbiont to host cell
E0046789molecular_functionhost cell surface receptor binding
E0046872molecular_functionmetal ion binding
f0019028cellular_componentviral capsid
F0005198molecular_functionstructural molecule activity
F0019028cellular_componentviral capsid
F0019031cellular_componentviral envelope
F0019064biological_processfusion of virus membrane with host plasma membrane
F0039621cellular_componentT=13 icosahedral viral capsid
F0039626cellular_componentviral intermediate capsid
F0044650biological_processadhesion of symbiont to host cell
F0046789molecular_functionhost cell surface receptor binding
F0046872molecular_functionmetal ion binding
g0019028cellular_componentviral capsid
G0005198molecular_functionstructural molecule activity
G0019028cellular_componentviral capsid
G0019031cellular_componentviral envelope
G0019064biological_processfusion of virus membrane with host plasma membrane
G0039621cellular_componentT=13 icosahedral viral capsid
G0039626cellular_componentviral intermediate capsid
G0044650biological_processadhesion of symbiont to host cell
G0046789molecular_functionhost cell surface receptor binding
G0046872molecular_functionmetal ion binding
h0019028cellular_componentviral capsid
H0005198molecular_functionstructural molecule activity
H0019028cellular_componentviral capsid
H0019031cellular_componentviral envelope
H0019064biological_processfusion of virus membrane with host plasma membrane
H0039621cellular_componentT=13 icosahedral viral capsid
H0039626cellular_componentviral intermediate capsid
H0044650biological_processadhesion of symbiont to host cell
H0046789molecular_functionhost cell surface receptor binding
H0046872molecular_functionmetal ion binding
i0019028cellular_componentviral capsid
I0005198molecular_functionstructural molecule activity
I0019028cellular_componentviral capsid
I0019031cellular_componentviral envelope
I0019064biological_processfusion of virus membrane with host plasma membrane
I0039621cellular_componentT=13 icosahedral viral capsid
I0039626cellular_componentviral intermediate capsid
I0044650biological_processadhesion of symbiont to host cell
I0046789molecular_functionhost cell surface receptor binding
I0046872molecular_functionmetal ion binding
j0019028cellular_componentviral capsid
J0005198molecular_functionstructural molecule activity
J0019028cellular_componentviral capsid
J0019031cellular_componentviral envelope
J0019064biological_processfusion of virus membrane with host plasma membrane
J0039621cellular_componentT=13 icosahedral viral capsid
J0039626cellular_componentviral intermediate capsid
J0044650biological_processadhesion of symbiont to host cell
J0046789molecular_functionhost cell surface receptor binding
J0046872molecular_functionmetal ion binding
k0019028cellular_componentviral capsid
K0005198molecular_functionstructural molecule activity
K0019028cellular_componentviral capsid
K0019031cellular_componentviral envelope
K0019064biological_processfusion of virus membrane with host plasma membrane
K0039621cellular_componentT=13 icosahedral viral capsid
K0039626cellular_componentviral intermediate capsid
K0044650biological_processadhesion of symbiont to host cell
K0046789molecular_functionhost cell surface receptor binding
K0046872molecular_functionmetal ion binding
l0019028cellular_componentviral capsid
L0005198molecular_functionstructural molecule activity
L0019028cellular_componentviral capsid
L0019031cellular_componentviral envelope
L0019064biological_processfusion of virus membrane with host plasma membrane
L0039621cellular_componentT=13 icosahedral viral capsid
L0039626cellular_componentviral intermediate capsid
L0044650biological_processadhesion of symbiont to host cell
L0046789molecular_functionhost cell surface receptor binding
L0046872molecular_functionmetal ion binding
m0019028cellular_componentviral capsid
M0005198molecular_functionstructural molecule activity
M0019028cellular_componentviral capsid
M0019031cellular_componentviral envelope
M0019064biological_processfusion of virus membrane with host plasma membrane
M0039621cellular_componentT=13 icosahedral viral capsid
M0039626cellular_componentviral intermediate capsid
M0044650biological_processadhesion of symbiont to host cell
M0046789molecular_functionhost cell surface receptor binding
M0046872molecular_functionmetal ion binding
n0019028cellular_componentviral capsid
N0005198molecular_functionstructural molecule activity
N0019028cellular_componentviral capsid
N0019031cellular_componentviral envelope
N0019064biological_processfusion of virus membrane with host plasma membrane
N0039621cellular_componentT=13 icosahedral viral capsid
N0039626cellular_componentviral intermediate capsid
N0044650biological_processadhesion of symbiont to host cell
N0046789molecular_functionhost cell surface receptor binding
N0046872molecular_functionmetal ion binding
o0019028cellular_componentviral capsid
O0005198molecular_functionstructural molecule activity
O0019028cellular_componentviral capsid
O0019031cellular_componentviral envelope
O0019064biological_processfusion of virus membrane with host plasma membrane
O0039621cellular_componentT=13 icosahedral viral capsid
O0039626cellular_componentviral intermediate capsid
O0044650biological_processadhesion of symbiont to host cell
O0046789molecular_functionhost cell surface receptor binding
O0046872molecular_functionmetal ion binding
p0019028cellular_componentviral capsid
P0005198molecular_functionstructural molecule activity
P0019028cellular_componentviral capsid
P0019031cellular_componentviral envelope
P0019064biological_processfusion of virus membrane with host plasma membrane
P0039621cellular_componentT=13 icosahedral viral capsid
P0039626cellular_componentviral intermediate capsid
P0044650biological_processadhesion of symbiont to host cell
P0046789molecular_functionhost cell surface receptor binding
P0046872molecular_functionmetal ion binding
q0019028cellular_componentviral capsid
Q0005198molecular_functionstructural molecule activity
Q0019028cellular_componentviral capsid
Q0019031cellular_componentviral envelope
Q0019064biological_processfusion of virus membrane with host plasma membrane
Q0039621cellular_componentT=13 icosahedral viral capsid
Q0039626cellular_componentviral intermediate capsid
Q0044650biological_processadhesion of symbiont to host cell
Q0046789molecular_functionhost cell surface receptor binding
Q0046872molecular_functionmetal ion binding
r0019028cellular_componentviral capsid
R0005198molecular_functionstructural molecule activity
R0019028cellular_componentviral capsid
R0019031cellular_componentviral envelope
R0019064biological_processfusion of virus membrane with host plasma membrane
R0039621cellular_componentT=13 icosahedral viral capsid
R0039626cellular_componentviral intermediate capsid
R0044650biological_processadhesion of symbiont to host cell
R0046789molecular_functionhost cell surface receptor binding
R0046872molecular_functionmetal ion binding
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues108
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_04131, ECO:0000269|PubMed:19520960
ChainResidueDetails
aASP95
bASP228
qASP228
qVAL229
qASP301
rASP95
rGLN177
rGLY206
rASP228
rVAL229
rASP301
bVAL229
bASP301
cASP95
cGLN177
cGLY206
cASP228
cVAL229
cASP301
dASP95
aGLN177
dGLN177
dGLY206
dASP228
dVAL229
dASP301
eASP95
eGLN177
eGLY206
eASP228
eVAL229
aGLY206
eASP301
fASP95
fGLN177
fGLY206
fASP228
fVAL229
fASP301
gASP95
gGLN177
gGLY206
aASP228
gASP228
gVAL229
gASP301
hASP95
hGLN177
hGLY206
hASP228
hVAL229
hASP301
iASP95
aVAL229
iGLN177
iGLY206
iASP228
iVAL229
iASP301
jASP95
jGLN177
jGLY206
jASP228
jVAL229
aASP301
jASP301
kASP95
kGLN177
kGLY206
kASP228
kVAL229
kASP301
lASP95
lGLN177
lGLY206
bASP95
lASP228
lVAL229
lASP301
mASP95
mGLN177
mGLY206
mASP228
mVAL229
mASP301
nASP95
bGLN177
nGLN177
nGLY206
nASP228
nVAL229
nASP301
oASP95
oGLN177
oGLY206
oASP228
oVAL229
bGLY206
oASP301
pASP95
pGLN177
pGLY206
pASP228
pVAL229
pASP301
qASP95
qGLN177
qGLY206

site_idSWS_FT_FI2
Number of Residues54
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_04131, ECO:0000269|PubMed:19487668, ECO:0000269|PubMed:19520960
ChainResidueDetails
aTHR214
dTHR214
dGLU216
dASP231
eTHR214
eGLU216
eASP231
fTHR214
fGLU216
fASP231
gTHR214
aGLU216
gGLU216
gASP231
hTHR214
hGLU216
hASP231
iTHR214
iGLU216
iASP231
jTHR214
jGLU216
aASP231
jASP231
kTHR214
kGLU216
kASP231
lTHR214
lGLU216
lASP231
mTHR214
mGLU216
mASP231
bTHR214
nTHR214
nGLU216
nASP231
oTHR214
oGLU216
oASP231
pTHR214
pGLU216
pASP231
qTHR214
bGLU216
qGLU216
qASP231
rTHR214
rGLU216
rASP231
bASP231
cTHR214
cGLU216
cASP231

site_idSWS_FT_FI3
Number of Residues18
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000269|PubMed:19487668, ECO:0000269|PubMed:21157433
ChainResidueDetails
aASN69
jASN69
kASN69
lASN69
mASN69
nASN69
oASN69
pASN69
qASN69
rASN69
bASN69
cASN69
dASN69
eASN69
fASN69
gASN69
hASN69
iASN69

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PDB entries from 2024-07-10

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