6WLC

Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-5'-Monophosphate

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B (A, B)	Uridylate-specific endoribonuclease	polymer	370	41657.2	2	UniProt (P0DTD1) Pfam (PF19219) Pfam (PF19216) Pfam (PF19215)	Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)	NSP15 endoribnuclease
2	C, M (A, B)	URIDINE-5'-MONOPHOSPHATE	non-polymer		324.2	2	Chemie (U5P)
3	D, N (A, B)	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	non-polymer		122.1	2	Chemie (TRS)
4	E, G, H, I, J... (A, B)	1,2-ETHANEDIOL	non-polymer		62.1	10	Chemie (EDO)
5	F, Q, S, T (A, B)	ACETATE ION	non-polymer		59.0	4	Chemie (ACT)
6	L (A)	SULFATE ION	non-polymer		96.1	1	Chemie (SO4)
7	U, V (B)	FORMIC ACID	non-polymer		46.0	2	Chemie (FMT)
8	X, Y (A, B)	water	water		18.0	486	Chemie (HOH)

Sequence modifications

A, B: 2 - 347 (UniProt: P0DTD1)

PDB	External Database	Details
Met -22	-	initiating methionine
His -21	-	expression tag
His -20	-	expression tag
His -19	-	expression tag
His -18	-	expression tag
His -17	-	expression tag
His -16	-	expression tag
Ser -15	-	expression tag
Ser -14	-	expression tag
Gly -13	-	expression tag
Val -12	-	expression tag
Asp -11	-	expression tag
Leu -10	-	expression tag
Gly -9	-	expression tag
Thr -8	-	expression tag
Glu -7	-	expression tag
Asn -6	-	expression tag
Leu -5	-	expression tag
Tyr -4	-	expression tag
Phe -3	-	expression tag
Gln -2	-	expression tag
Ser -1	-	expression tag
Asn 0	-	expression tag
Met 1	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	83314.5
Non-Polymers*	Number of molecules	21
	Total formula weight	1937.6
All*	Total formula weight	85252.1

*Water molecules are not included.