6WBQ
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with Tubastatin A
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Polyamine deacetylase HDAC10 | polymer | 676 | 75055.6 | 1 | UniProt (F1QCV2) Pfam (PF00850) | Danio rerio (Zebrafish) | Histone deacetylase 10 |
| 2 | B (A) | 4-[(2-methyl-3,4-dihydro-1~{H}-pyrido[4,3-b]indol-5-yl)methyl]-~{N}-oxidanyl-benzamide | non-polymer | 335.4 | 1 | Chemie (N9W) | |||
| 3 | C, D, E, F, G (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 4 | H, I (A) | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
| 5 | J, K, L (A) | PHOSPHATE ION | non-polymer | 95.0 | 3 | Chemie (PO4) | |||
| 6 | M (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 7 | N (A) | water | water | 18.0 | 194 | Chemie (HOH) |
Sequence modifications
A: 2 - 675 (UniProt: F1QCV2)
| PDB | External Database | Details |
|---|---|---|
| Ala 1 | - | expression tag |
| Glu 24 | Ala 24 | conflict |
| Ala 94 | Asp 94 | conflict |
| Phe 154 | Ile 154 | conflict |
| Thr 548 | Ser 548 | conflict |
| Glu 586 | Gly 586 | conflict |
| Arg 593 | Gly 593 | conflict |
| Arg 596 | Thr 596 | conflict |
| Met 613 | Thr 613 | conflict |
| Pro 646 | Leu 646 | conflict |
| Trp 676 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 75055.6 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 1074.3 | |
| All* | Total formula weight | 76129.9 |
