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6W5M

Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class02)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Retinoblastoma-binding protein 5polymer53859179.41UniProt (Q15291)
Pfam (PF00400)
Homo sapiens (Human)RBBP-5,Retinoblastoma-binding protein RBQ-3
2B
(B)
WD repeat-containing protein 5polymer31334391.01UniProt (P61964)
Pfam (PF00400)
Homo sapiens (Human)BMP2-induced 3-kb gene protein
3C
(C)
Histone-lysine N-methyltransferase 2Apolymer20924141.71UniProt (Q03164)
Pfam (PF00856)
Homo sapiens (Human)Lysine N-methyltransferase 2A,ALL-1,CXXC-type zinc finger protein 7,Myeloid/lymphoid or mixed-lineage leukemia,Myeloid/lymphoid or mixed-lineage leukemia protein 1,Trithorax-like protein,Zinc finger protein HRX
4D
(D)
Set1/Ash2 histone methyltransferase complex subunit ASH2polymer53460244.61UniProt (Q9UBL3)
Pfam (PF21257)
Pfam (PF21198)
Pfam (PF00622)
Homo sapiens (Human)ASH2-like protein
5E, I
(G, K)
Histone H3.2polymer13615435.12UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)Histone H3
6F, J
(H, L)
Histone H4polymer10311394.42UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
7G, K
(I, M)
Histone H2A type 1polymer12913978.22UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (African clawed frog)
8H, L
(J, N)
Histone H2B 1.1polymer12313655.92UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
9M
(O)
DNA (147-MER)polymer14745138.81synthetic construct
10N
(P)
DNA (147-MER)polymer14745610.01synthetic construct
Sequence modifications
A: 2 - 538 (UniProt: Q15291)
PDBExternal DatabaseDetails
Ser 1-expression tag
C: 3762 - 3969 (UniProt: Q03164)
PDBExternal DatabaseDetails
Ser 3761-expression tag
Ile 3861Asn 3861conflict
Leu 3867Gln 3867conflict
D: 2 - 534 (UniProt: Q9UBL3)
PDBExternal DatabaseDetails
Ser 1-expression tag
G, K: 0 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103engineered mutation
I, M: 1 - 129 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100engineered mutation
Ser 123Ala 124engineered mutation
J, N: 1 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Met 0-initiating methionine
Thr 29Ser 33engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains14
Total formula weight377633.0
All*Total formula weight377633.0
*Water molecules are not included.

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PDB entries from 2024-10-30

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