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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6VWM

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
135S ribosomal RNApolymer12038813.11GenBank (984297099)Escherichia coli
25tRNAPhepolymer7624525.61GenBank (984297099)Escherichia coli
3A50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
4B50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
5C50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coliLarge ribosomal subunit protein uL4
6D50S ribosomal protein L5polymer17920333.61UniProt (D7Z9G7)
In PDB		Escherichia coli
7E50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coliLarge ribosomal subunit protein uL6
8G50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coliLarge ribosomal subunit protein bL9
9H50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coliLarge ribosomal subunit protein uL13
10I50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coliLarge ribosomal subunit protein uL14
11J50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coliLarge ribosomal subunit protein uL15
12K50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
13L50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coliLarge ribosomal subunit protein bL17
14M50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coliLarge ribosomal subunit protein uL18
15N50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coliLarge ribosomal subunit protein bL19
16O50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coliLarge ribosomal subunit protein bL20
17P50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coliLarge ribosomal subunit protein bL21
18Q50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
19R50S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coliLarge ribosomal subunit protein uL23
20S50S ribosomal protein L24polymer10411339.31UniProt (D7Z9G6)
In PDB		Escherichia coli
21T50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coliLarge ribosomal subunit protein bL25
22U50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
23V50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coliLarge ribosomal subunit protein bL28
24W50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coliLarge ribosomal subunit protein uL29
25X50S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coliLarge ribosomal subunit protein uL30
26Y50S ribosomal protein L32polymer576463.41UniProt (D7ZGG2)
In PDB		Escherichia coli
27Z50S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coliLarge ribosomal subunit protein bL33
28AA50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coliLarge ribosomal subunit protein bL34
29AB50S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
30AC50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coliLarge ribosomal subunit protein bL36-A,Ribosomal protein B
31223S ribosomal RNApolymer2903941305.31GenBank (984297099)Escherichia coli
32a30S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coliSmall ribosomal subunit protein uS2
33b30S ribosomal protein S3polymer23326031.31UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coliSmall ribosomal subunit protein uS3
34c30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coliSmall ribosomal subunit protein uS4
35d30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coliSmall ribosomal subunit protein uS5
36e30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
37f30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
38g30S ribosomal protein S8polymer13014146.61UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coliSmall ribosomal subunit protein uS8
39h30S ribosomal protein S9polymer13014886.31UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coliSmall ribosomal subunit protein uS9
40i30S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coliSmall ribosomal subunit protein uS10
41j30S ribosomal protein S11polymer12913871.01UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coliSmall ribosomal subunit protein uS11
42k30S ribosomal protein S12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coliSmall ribosomal subunit protein uS12
43l30S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coliSmall ribosomal subunit protein uS13
44m30S ribosomal protein S14polymer10111606.61UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coliSmall ribosomal subunit protein uS14
45n30S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coliSmall ribosomal subunit protein uS15
46o30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coliSmall ribosomal subunit protein bS16
47p30S ribosomal protein S17polymer849724.51UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coliSmall ribosomal subunit protein uS17
48q30S ribosomal protein S18polymer759005.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coliSmall ribosomal subunit protein bS18
49r30S ribosomal protein S19polymer9210455.41UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coliSmall ribosomal subunit protein uS19
50s30S ribosomal protein S20polymer879708.51UniProt (D7ZAS2)
In PDB		Escherichia coli
51t30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coliSmall ribosomal subunit protein bS21
52116S ribosomal RNApolymer1540499015.61GenBank (1726036237)Escherichia coli
534HIV frameshift stimulating sequence mRNApolymer9330171.11Human immunodeficiency virus 1
542, 1, A, YMAGNESIUM IONnon-polymer24.353Chemie (MG)
Sequence modifications
3: 1 - 120 (GenBank: 984297099)
PDBExternal DatabaseDetails
A 120U 3656978conflict
5: 1 - 76 (GenBank: 984297099)
PDBExternal DatabaseDetails
G 47U 645915conflict
U 48C 645914conflict
2: 1 - 2903 (GenBank: 984297099)
PDBExternal DatabaseDetails
C 208-insertion
U 284C 1050616conflict
G 285A 1050617conflict
G 356A 1050688conflict
C 542U 1050874conflict
C 747U 1051079conflict
U 1174G 1051506conflict
C 1211U 1051543conflict
U 1513C 1051845conflict
G 1723A 1052055conflict
C 1730U 1052062conflict
U 1865C 1052197conflict
A 2163G 1052495conflict
C 2712U 1053044conflict
C 2794U 1053126conflict
U 2796C 1053128conflict
U 2797C 1053129conflict
A 2799G 1053131conflict
G 2802A 1053134conflict
c: 0 - 205 (UniProt: P0A7V8)
PDBExternal DatabaseDetails
Ile 47Leu 48conflict
1: 2 - 1541 (GenBank: 1726036237)
PDBExternal DatabaseDetails
A 1517G 4510230conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight2185908.8
Non-Polymers*Number of molecules53
Total formula weight1288.2
All*Total formula weight2187196.9
*Water molecules are not included.

221716

PDB entries from 2024-06-26

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