6VV5
Cryo-EM structure of porcine epidemic diarrhea virus (PEDV) spike protein
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1356 | 148463.7 | 3 | UniProt (S5RJN4) Pfam (PF01600) Pfam (PF19209) Pfam (PF01601) | Porcine epidemic diarrhea virus | S glycoprotein,E2,Peplomer protein |
| 2 | D, N, X (D, N, X) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1438.3 | 3 | In PDB GlyTouCan (G59621EZ) | |||
| 3 | AA, CA, DA, E, EA... (a, c, d, E, e...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 24 | In PDB GlyTouCan (G42666HT) | |||
| 4 | BA, H, R (b, H, R) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 5 | HA, IA, JA, KA, LA... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 15 | Chemie (NAG) | |||
| 6 | AB, BB, MA, NA, TA... (C, A, B) | PALMITOLEIC ACID | non-polymer | 254.4 | 6 | Chemie (PAM) |
Sequence modifications
A, B, C: 19 - 1322 (UniProt: S5RJN4)
| PDB | External Database | Details |
|---|---|---|
| Gly 1323 | - | expression tag |
| Ser 1324 | - | expression tag |
| Gly 1325 | - | expression tag |
| Tyr 1326 | - | expression tag |
| Ile 1327 | - | expression tag |
| Pro 1328 | - | expression tag |
| Glu 1329 | - | expression tag |
| Ala 1330 | - | expression tag |
| Pro 1331 | - | expression tag |
| Arg 1332 | - | expression tag |
| Asp 1333 | - | expression tag |
| Gly 1334 | - | expression tag |
| Gln 1335 | - | expression tag |
| Ala 1336 | - | expression tag |
| Tyr 1337 | - | expression tag |
| Val 1338 | - | expression tag |
| Arg 1339 | - | expression tag |
| Lys 1340 | - | expression tag |
| Asp 1341 | - | expression tag |
| Gly 1342 | - | expression tag |
| Glu 1343 | - | expression tag |
| Trp 1344 | - | expression tag |
| Val 1345 | - | expression tag |
| Leu 1346 | - | expression tag |
| Leu 1347 | - | expression tag |
| Ser 1348 | - | expression tag |
| Thr 1349 | - | expression tag |
| Phe 1350 | - | expression tag |
| Leu 1351 | - | expression tag |
| Glu 1352 | - | expression tag |
| Asn 1353 | - | expression tag |
| Leu 1354 | - | expression tag |
| Tyr 1355 | - | expression tag |
| Phe 1356 | - | expression tag |
| Gln 1357 | - | expression tag |
| Gly 1358 | - | expression tag |
| Gly 1359 | - | expression tag |
| His 1360 | - | expression tag |
| His 1361 | - | expression tag |
| His 1362 | - | expression tag |
| His 1363 | - | expression tag |
| His 1364 | - | expression tag |
| His 1365 | - | expression tag |
| Ala 1366 | - | expression tag |
| Trp 1367 | - | expression tag |
| Ser 1368 | - | expression tag |
| His 1369 | - | expression tag |
| Pro 1370 | - | expression tag |
| Gln 1371 | - | expression tag |
| Phe 1372 | - | expression tag |
| Glu 1373 | - | expression tag |
| Lys 1374 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 445391.0 | |
| Branched | Number of molecules | 30 |
| Total formula weight | 16260.1 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 4844.6 | |
| All* | Total formula weight | 466495.7 |
