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6VNP

Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dT

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D, G, J
(P, B, E, H)
DNA (5'-D(P*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*T)-3')polymer144400.94Homo sapiens
2B, E, H, K
(T, C, F, I)
DNA (5'-D(*TP*TP*CP*AP*T*(R5M)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')polymer195691.74Homo sapiens
3C, F, I, L
(A, D, G, J)
DNA polymerase IVpolymer34139019.54UniProt (A0A0E3K6E9)
Pfam (PF00817)
Pfam (PF11798)
Pfam (PF11799)
UniProt (by SIFTS) (Q97W02)
Saccharolobus solfataricusPol IV
4M, P, S, V
(A, D, G, J)
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosinenon-polymer490.24Chemie (DZ4)
5N, O, Q, R, T...
(A, D, G, J)
MAGNESIUM IONnon-polymer24.38Chemie (MG)
6AA, BA, CA, DA, EA...
(A, B, C, D, E...)
waterwater18.0363Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight196448.3
Non-Polymers*Number of molecules12
Total formula weight2155.2
All*Total formula weight198603.5
*Water molecules are not included.

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PDB entries from 2025-12-17

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