6VIE
Structure of caspase-1 in complex with gasdermin D
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Caspase-1 subunit p20 | polymer | 198 | 21561.8 | 1 | UniProt (P29466) Pfam (PF00656) In PDB | Homo sapiens (Human) | CASP-1,Interleukin-1 beta convertase,IL-1BC,Interleukin-1 beta-converting enzyme,IL-1 beta-converting enzyme,p45 |
2 | B | Caspase-1 subunit p10 | polymer | 90 | 10402.9 | 1 | UniProt (P29466) Pfam (PF00656) In PDB | Homo sapiens (Human) | CASP-1,Interleukin-1 beta convertase,IL-1BC,Interleukin-1 beta-converting enzyme,IL-1 beta-converting enzyme,p45 |
3 | C, D | Gasdermin-D | polymer | 464 | 50818.7 | 2 | UniProt (Q9D8T2) Pfam (PF04598) Pfam (PF17708) In PDB | Mus musculus (Mouse) | Gasdermin domain-containing protein 1 |
Sequence modifications
A: 120 - 303 (UniProt: P29466)
A: 304 - 316 (PDB: 6VIE)
B: 317 - 404 (UniProt: P29466)
C, D: 1 - 487 (UniProt: Q9D8T2)
PDB | External Database | Details |
---|---|---|
Met 119 | - | initiating methionine |
Ala 285 | Cys 285 | engineered mutation |
B: 317 - 404 (UniProt: P29466)
PDB | External Database | Details |
---|---|---|
Gly 315 | - | expression tag |
Ser 316 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ser 0 | - | expression tag |
- | Arg 248 | deletion |
- | Lys 249 | deletion |
- | Ala 250 | deletion |
- | Val 251 | deletion |
- | Gly 252 | deletion |
- | Gln 253 | deletion |
- | Arg 254 | deletion |
- | His 255 | deletion |
- | His 256 | deletion |
- | Gly 257 | deletion |
- | Leu 258 | deletion |
- | Asn 259 | deletion |
- | Val 260 | deletion |
- | Leu 261 | deletion |
- | Ala 262 | deletion |
- | Ala 263 | deletion |
- | Leu 264 | deletion |
- | Cys 265 | deletion |
- | Ser 266 | deletion |
- | Ile 267 | deletion |
- | Gly 268 | deletion |
- | Lys 269 | deletion |
- | Gln 270 | deletion |
- | Leu 271 | deletion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 133602.2 | |
All* | Total formula weight | 133602.2 |