6VFW
Crystal structure of human delta protocadherin 10 EC1-EC4
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Protocadherin-10 | polymer | 444 | 48309.9 | 5 | UniProt (Q9P2E7) Pfam (PF08266) Pfam (PF00028) | Homo sapiens (Human) | |
| 2 | F, G, H, I, J (F, G, H, I, J) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 5 | In PDB GlyTouCan (G82348BZ) | |||
| 3 | AA, BA, CA, CB, DA... (B, E, C, A, D) | CALCIUM ION | non-polymer | 40.1 | 45 | Chemie (CA) | |||
| 4 | AB, BB, EA, FA, LB... (D, B, E, C, A) | alpha-D-mannopyranose | non-polymer | 180.2 | 10 | Chemie (MAN) | |||
| 5 | NB, OB, PB, QB, RB (A, B, C, D, E) | water | water | 18.0 | 23 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 1 - 438 (UniProt: Q9P2E7)
| PDB | External Database | Details |
|---|---|---|
| His 439 | - | expression tag |
| His 440 | - | expression tag |
| His 441 | - | expression tag |
| His 442 | - | expression tag |
| His 443 | - | expression tag |
| His 444 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 241549.6 | |
| Branched | Number of molecules | 5 |
| Total formula weight | 5284.8 | |
| Non-Polymers* | Number of molecules | 55 |
| Total formula weight | 3605.1 | |
| All* | Total formula weight | 250439.5 |
