6VFP
Crystal structure of human protocadherin 1 EC1-EC4
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Protocadherin-1 | polymer | 447 | 48915.0 | 1 | UniProt (Q08174) Pfam (PF08266) Pfam (PF00028) | Homo sapiens (Human) | Cadherin-like protein 1,Protocadherin-42,PC42 |
| 2 | B (B) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 3 | C (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 4 | D, E, F, G, H... (A) | CALCIUM ION | non-polymer | 40.1 | 10 | Chemie (CA) | |||
| 5 | N (A) | water | water | 18.0 | 15 | Chemie (HOH) |
Sequence modifications
A: 1 - 441 (UniProt: Q08174)
| PDB | External Database | Details |
|---|---|---|
| His 442 | - | expression tag |
| His 443 | - | expression tag |
| His 444 | - | expression tag |
| His 445 | - | expression tag |
| His 446 | - | expression tag |
| His 447 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 48915.0 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 586.5 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 622.0 | |
| All* | Total formula weight | 50123.5 |
