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6VDD

POL domain of Pol1 from M. smegmatis complex with DNA primer-template and dNTP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D
(A, D)
DNA polymerase Ipolymer60566477.62UniProt (I7G3P9)
Pfam (PF22619)
Pfam (PF00476)
UniProt (by SIFTS) (A0QYZ2)
Mycolicibacterium smegmatis
2B, E
(B, E)
DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A*(DCT))-3')polymer113358.22synthetic construct
3C
(C)
DNA (5'-D(P*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3')polymer144280.81synthetic construct
4F
(F)
DNA (5'-D(P*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3')polymer164923.21synthetic construct
5G, L
(A, D)
2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATEnon-polymer451.22Chemie (DCT)
6H, I, J, K, M...
(A, B, D)
MAGNESIUM IONnon-polymer24.36Chemie (MG)
7O, P, Q, R, S...
(A, B, C, D, E...)
waterwater18.0812Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight148875.5
Non-Polymers*Number of molecules8
Total formula weight1048.1
All*Total formula weight149923.7
*Water molecules are not included.

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PDB entries from 2025-06-18

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