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6VCM

Crystal structure of E.coli RppH-DapF in complex with GTP, Mg2+ and F-

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ADiaminopimelate epimerasepolymer27530154.41UniProt (P0A6K1)
Pfam (PF01678)
In PDB
Escherichia coli (strain K12)DAP epimerase,PLP-independent amino acid racemase
2BRNA pyrophosphohydrolasepolymer16118965.81UniProt (P0A776)
Pfam (PF00293)
In PDB
Escherichia coli (strain K12)(Di)nucleoside polyphosphate hydrolase,Ap5A pyrophosphatase
3BCHLORIDE IONnon-polymer35.51Chemie (CL)
4BMAGNESIUM IONnon-polymer24.34Chemie (MG)
5BGUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
6BFLUORIDE IONnon-polymer19.01Chemie (F)
7waterwater18.073Chemie (HOH)
Sequence modifications
A: 1 - 274 (UniProt: P0A6K1)
PDBExternal DatabaseDetails
Ser 0-expression tag
Ala 36Arg 36engineered mutation
Ala 268Tyr 268engineered mutation
B: 1 - 160 (UniProt: P0A776)
PDBExternal DatabaseDetails
Ser 0-expression tag
Ala 159Gln 159engineered mutation
Ala 160Glu 160engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight49120.2
Non-Polymers*Number of molecules7
Total formula weight674.9
All*Total formula weight49795.0
*Water molecules are not included.

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PDB entries from 2024-07-31

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