6UXW
SWI/SNF nucleosome complex with ADP-BeFx
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | R, V | Histone H3.2 | polymer | 135 | 15303.9 | 2 | UniProt (P84233) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | |
| 2 | S, W | Histone H4 | polymer | 102 | 11263.2 | 2 | UniProt (P62799) Pfam (PF15511) In PDB | Xenopus laevis (African clawed frog) | |
| 3 | T, X | Histone H2A type 1 | polymer | 129 | 13978.2 | 2 | UniProt (P06897) Pfam (PF00125) Pfam (PF16211) In PDB | Xenopus laevis (African clawed frog) | |
| 4 | U, Y | Histone H2B 1.1 | polymer | 122 | 13524.8 | 2 | UniProt (P02281) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | H2B1.1 |
| 5 | a | 601 sequence bottom strand | polymer | 185 | 56943.3 | 1 | synthetic construct | ||
| 6 | b | 601 sequence top strand | polymer | 200 | 61785.4 | 1 | synthetic construct | ||
| 7 | P | Actin-related protein 7 | polymer | 477 | 53863.0 | 1 | UniProt (Q12406) Pfam (PF00022) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Actin-like protein ARP7,Chromatin structure-remodeling complex protein ARP7,SWI/SNF complex component ARP7 |
| 8 | Q | Actin-like protein ARP9 | polymer | 467 | 53131.9 | 1 | UniProt (Q05123) Pfam (PF00022) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Chromatin structure-remodeling complex protein ARP9,SWI/SNF complex component ARP9 |
| 9 | Z | Regulator of Ty1 transposition protein 102 | polymer | 157 | 17817.6 | 1 | UniProt (P53330) Pfam (PF09510) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | |
| 10 | A | Transcription regulatory protein SNF2 | polymer | 1703 | 194315.1 | 1 | UniProt (P22082) Pfam (PF08880) Pfam (PF00176) Pfam (PF00271) Pfam (PF14619) Pfam (PF00439) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | ATP-dependent helicase SNF2,Regulatory protein GAM1,Regulatory protein SWI2,SWI/SNF complex component SNF2,Transcription factor TYE3 |
| 11 | B | SWI/SNF chromatin-remodeling complex subunit SWI1 | polymer | 1314 | 148065.2 | 1 | UniProt (P09547) Pfam (PF01388) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Regulatory protein GAM3,SWI/SNF complex subunit SWI1,Transcription regulatory protein ADR6,Transcription regulatory protein SWI1 |
| 12 | C | SWI/SNF chromatin-remodeling complex subunit SNF5 | polymer | 905 | 102642.2 | 1 | UniProt (P18480) Pfam (PF04855) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | SWI/SNF complex subunit SNF5,Transcription factor TYE4,Transcription regulatory protein SNF5 |
| 13 | D, E, F, G | SWI/SNF complex subunit SWI3 | polymer | 825 | 93034.2 | 4 | UniProt (P32591) Pfam (PF16495) Pfam (PF04433) Pfam (PF00249) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Transcription factor TYE2,Transcription regulatory protein SWI3 |
| 14 | H | Transcription regulatory protein SNF12 | polymer | 566 | 63947.6 | 1 | UniProt (P53628) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | SWI/SNF complex component SWP73 |
| 15 | I | Transcription regulatory protein SNF6 | polymer | 179 | 19565.2 | 1 | UniProt (P18888) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | SWI/SNF complex component SNF6 |
| 16 | J, K, L, N, O | Unknown protein | polymer | 67 | 5720.0 | 5 | Saccharomyces cerevisiae S288C (Baker's yeast) | ||
| 17 | M | SWI/SNF global transcription activator complex subunit SWP82 | polymer | 83 | 7081.7 | 1 | Saccharomyces cerevisiae S288C (Baker's yeast) | ||
| 18 | P, Q, A | PHOSPHATE ION | non-polymer | 95.0 | 12 | Chemie (PO4) | |||
| 19 | A | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 20 | A | BERYLLIUM TRIFLUORIDE ION | non-polymer | 66.0 | 1 | Chemie (BEF) | |||
| 21 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 22 | water | water | 18.0 | 86 | Chemie (HOH) |
Sequence modifications
R, V: 1 - 135 (UniProt: P84233)
T, X: 1 - 129 (UniProt: P06897)
U, Y: 1 - 122 (UniProt: P02281)
I: 1 - 150 (UniProt: P18888)
I: 152 - 180 (PDB: 6UXW)
| PDB | External Database | Details |
|---|---|---|
| Ala 102 | Gly 103 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 99 | Gly 100 | conflict |
| Ser 123 | Ala 124 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Thr 29 | Ser 33 | conflict |
I: 152 - 180 (PDB: 6UXW)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 28 |
| Total formula weight | 1288035.4 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1657.2 | |
| All* | Total formula weight | 1289692.5 |
