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6UXW

SWI/SNF nucleosome complex with ADP-BeFx

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000182molecular_functionrDNA binding
A0000785cellular_componentchromatin
A0003677molecular_functionDNA binding
A0003682molecular_functionchromatin binding
A0004386molecular_functionhelicase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0006261biological_processDNA-templated DNA replication
A0006302biological_processdouble-strand break repair
A0006338biological_processchromatin remodeling
A0006355biological_processregulation of DNA-templated transcription
A0006357biological_processregulation of transcription by RNA polymerase II
A0016514cellular_componentSWI/SNF complex
A0016787molecular_functionhydrolase activity
A0031492molecular_functionnucleosomal DNA binding
A0031496biological_processpositive regulation of mating type switching
A0031507biological_processheterochromatin formation
A0034198biological_processcellular response to amino acid starvation
A0035973biological_processaggrephagy
A0042148biological_processDNA strand invasion
A0042393molecular_functionhistone binding
A0045815biological_processtranscription initiation-coupled chromatin remodeling
A0045944biological_processpositive regulation of transcription by RNA polymerase II
A0061629molecular_functionRNA polymerase II-specific DNA-binding transcription factor binding
A0140008molecular_functionhistone H4 reader activity
A0140015molecular_functionhistone H3K14ac reader activity
A0140566molecular_functionhistone reader activity
A0140658molecular_functionATP-dependent chromatin remodeler activity
A0140750molecular_functionnucleosome array spacer activity
A1900189biological_processpositive regulation of cell adhesion involved in single-species biofilm formation
A2000219biological_processpositive regulation of invasive growth in response to glucose limitation
B0000785cellular_componentchromatin
B0000976molecular_functiontranscription cis-regulatory region binding
B0003677molecular_functionDNA binding
B0005634cellular_componentnucleus
B0006261biological_processDNA-templated DNA replication
B0006338biological_processchromatin remodeling
B0006357biological_processregulation of transcription by RNA polymerase II
B0008270molecular_functionzinc ion binding
B0016514cellular_componentSWI/SNF complex
B0031496biological_processpositive regulation of mating type switching
B0034198biological_processcellular response to amino acid starvation
B0045944biological_processpositive regulation of transcription by RNA polymerase II
B0046872molecular_functionmetal ion binding
B0061629molecular_functionRNA polymerase II-specific DNA-binding transcription factor binding
C0000228cellular_componentnuclear chromosome
C0000724biological_processdouble-strand break repair via homologous recombination
C0000785cellular_componentchromatin
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005829cellular_componentcytosol
C0006338biological_processchromatin remodeling
C0006357biological_processregulation of transcription by RNA polymerase II
C0016514cellular_componentSWI/SNF complex
C0045944biological_processpositive regulation of transcription by RNA polymerase II
C0045991biological_processcarbon catabolite activation of transcription
C0061629molecular_functionRNA polymerase II-specific DNA-binding transcription factor binding
C2000219biological_processpositive regulation of invasive growth in response to glucose limitation
D0000785cellular_componentchromatin
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005829cellular_componentcytosol
D0006338biological_processchromatin remodeling
D0006355biological_processregulation of DNA-templated transcription
D0006357biological_processregulation of transcription by RNA polymerase II
D0016514cellular_componentSWI/SNF complex
D0031496biological_processpositive regulation of mating type switching
D0042393molecular_functionhistone binding
D0045893biological_processpositive regulation of DNA-templated transcription
D0045944biological_processpositive regulation of transcription by RNA polymerase II
E0000785cellular_componentchromatin
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005829cellular_componentcytosol
E0006338biological_processchromatin remodeling
E0006355biological_processregulation of DNA-templated transcription
E0006357biological_processregulation of transcription by RNA polymerase II
E0016514cellular_componentSWI/SNF complex
E0031496biological_processpositive regulation of mating type switching
E0042393molecular_functionhistone binding
E0045893biological_processpositive regulation of DNA-templated transcription
E0045944biological_processpositive regulation of transcription by RNA polymerase II
F0000785cellular_componentchromatin
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005829cellular_componentcytosol
F0006338biological_processchromatin remodeling
F0006355biological_processregulation of DNA-templated transcription
F0006357biological_processregulation of transcription by RNA polymerase II
F0016514cellular_componentSWI/SNF complex
F0031496biological_processpositive regulation of mating type switching
F0042393molecular_functionhistone binding
F0045893biological_processpositive regulation of DNA-templated transcription
F0045944biological_processpositive regulation of transcription by RNA polymerase II
G0000785cellular_componentchromatin
G0003677molecular_functionDNA binding
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005829cellular_componentcytosol
G0006338biological_processchromatin remodeling
G0006355biological_processregulation of DNA-templated transcription
G0006357biological_processregulation of transcription by RNA polymerase II
G0016514cellular_componentSWI/SNF complex
G0031496biological_processpositive regulation of mating type switching
G0042393molecular_functionhistone binding
G0045893biological_processpositive regulation of DNA-templated transcription
G0045944biological_processpositive regulation of transcription by RNA polymerase II
H0000785cellular_componentchromatin
H0005198molecular_functionstructural molecule activity
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005829cellular_componentcytosol
H0006338biological_processchromatin remodeling
H0006357biological_processregulation of transcription by RNA polymerase II
H0016514cellular_componentSWI/SNF complex
H0034198biological_processcellular response to amino acid starvation
H0045944biological_processpositive regulation of transcription by RNA polymerase II
P0000785cellular_componentchromatin
P0003674molecular_functionmolecular_function
P0003682molecular_functionchromatin binding
P0005198molecular_functionstructural molecule activity
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0006325biological_processchromatin organization
P0006337biological_processnucleosome disassembly
P0006338biological_processchromatin remodeling
P0006355biological_processregulation of DNA-templated transcription
P0006357biological_processregulation of transcription by RNA polymerase II
P0006368biological_processtranscription elongation by RNA polymerase II
P0016514cellular_componentSWI/SNF complex
P0016586cellular_componentRSC-type complex
P0035267cellular_componentNuA4 histone acetyltransferase complex
P0045944biological_processpositive regulation of transcription by RNA polymerase II
Q0000785cellular_componentchromatin
Q0005198molecular_functionstructural molecule activity
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0006325biological_processchromatin organization
Q0006337biological_processnucleosome disassembly
Q0006338biological_processchromatin remodeling
Q0006355biological_processregulation of DNA-templated transcription
Q0006357biological_processregulation of transcription by RNA polymerase II
Q0006368biological_processtranscription elongation by RNA polymerase II
Q0016514cellular_componentSWI/SNF complex
Q0016586cellular_componentRSC-type complex
Q0045944biological_processpositive regulation of transcription by RNA polymerase II
R0000786cellular_componentnucleosome
R0003677molecular_functionDNA binding
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005654cellular_componentnucleoplasm
R0005694cellular_componentchromosome
R0030527molecular_functionstructural constituent of chromatin
R0046982molecular_functionprotein heterodimerization activity
S0000786cellular_componentnucleosome
S0003677molecular_functionDNA binding
S0005515molecular_functionprotein binding
S0005634cellular_componentnucleus
S0005694cellular_componentchromosome
S0006334biological_processnucleosome assembly
S0030527molecular_functionstructural constituent of chromatin
S0046982molecular_functionprotein heterodimerization activity
T0000786cellular_componentnucleosome
T0003677molecular_functionDNA binding
T0005634cellular_componentnucleus
T0005694cellular_componentchromosome
T0030527molecular_functionstructural constituent of chromatin
T0031507biological_processheterochromatin formation
T0046982molecular_functionprotein heterodimerization activity
U0000786cellular_componentnucleosome
U0003677molecular_functionDNA binding
U0005515molecular_functionprotein binding
U0005634cellular_componentnucleus
U0005694cellular_componentchromosome
U0030527molecular_functionstructural constituent of chromatin
U0046982molecular_functionprotein heterodimerization activity
V0000786cellular_componentnucleosome
V0003677molecular_functionDNA binding
V0005515molecular_functionprotein binding
V0005634cellular_componentnucleus
V0005654cellular_componentnucleoplasm
V0005694cellular_componentchromosome
V0030527molecular_functionstructural constituent of chromatin
V0046982molecular_functionprotein heterodimerization activity
W0000786cellular_componentnucleosome
W0003677molecular_functionDNA binding
W0005515molecular_functionprotein binding
W0005634cellular_componentnucleus
W0005694cellular_componentchromosome
W0006334biological_processnucleosome assembly
W0030527molecular_functionstructural constituent of chromatin
W0046982molecular_functionprotein heterodimerization activity
X0000786cellular_componentnucleosome
X0003677molecular_functionDNA binding
X0005634cellular_componentnucleus
X0005694cellular_componentchromosome
X0030527molecular_functionstructural constituent of chromatin
X0031507biological_processheterochromatin formation
X0046982molecular_functionprotein heterodimerization activity
Y0000786cellular_componentnucleosome
Y0003677molecular_functionDNA binding
Y0005515molecular_functionprotein binding
Y0005634cellular_componentnucleus
Y0005694cellular_componentchromosome
Y0030527molecular_functionstructural constituent of chromatin
Y0046982molecular_functionprotein heterodimerization activity
Z0000785cellular_componentchromatin
Z0005515molecular_functionprotein binding
Z0005634cellular_componentnucleus
Z0006337biological_processnucleosome disassembly
Z0006338biological_processchromatin remodeling
Z0006357biological_processregulation of transcription by RNA polymerase II
Z0006368biological_processtranscription elongation by RNA polymerase II
Z0007059biological_processchromosome segregation
Z0015616molecular_functionDNA translocase activity
Z0016514cellular_componentSWI/SNF complex
Z0016586cellular_componentRSC-type complex
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue PO4 P 501
ChainResidue
PHIS15
PASP190
PALA224
PGLN229
PLYS232
PPO4503
PHOH608

site_idAC2
Number of Residues2
Detailsbinding site for residue PO4 P 502
ChainResidue
PASN53
PTYR89

site_idAC3
Number of Residues11
Detailsbinding site for residue PO4 P 503
ChainResidue
PHIS15
PARG16
PALA161
PGLY186
PLYS232
PSER397
PTHR398
PPO4501
PHOH602
PHOH603
PHOH608

site_idAC4
Number of Residues7
Detailsbinding site for residue PO4 P 504
ChainResidue
PHIS11
PGLY13
PGLU141
PPO4505
PHOH601
PHOH602
PHOH612

site_idAC5
Number of Residues6
Detailsbinding site for residue PO4 P 505
ChainResidue
PSER14
PASP158
PSER162
PASN165
PARG181
PPO4504

site_idAC6
Number of Residues7
Detailsbinding site for residue PO4 Q 501
ChainResidue
QSER16
QGLN17
QASN70
QGLY71
QTHR166
QHIS167
QHIS168

site_idAC7
Number of Residues4
Detailsbinding site for residue PO4 Q 502
ChainResidue
QARG15
QGLY338
QSER425
QGLU426

site_idAC8
Number of Residues4
Detailsbinding site for residue PO4 Q 503
ChainResidue
QGLY344
QLYS346
QHOH605
QHOH616

site_idAC9
Number of Residues4
Detailsbinding site for residue PO4 Q 504
ChainResidue
QARG15
QASP163
QGLY338
QHOH601

site_idAD1
Number of Residues4
Detailsbinding site for residue PO4 Q 505
ChainResidue
QASP206
QASP208
QASP286
QLYS288

site_idAD2
Number of Residues5
Detailsbinding site for residue PO4 Q 506
ChainResidue
PLYS293
QGLY314
QASP318
QASP356
QHIS357

site_idAD3
Number of Residues2
Detailsbinding site for residue PO4 A 1801
ChainResidue
AARG619
PASP431

site_idAD4
Number of Residues14
Detailsbinding site for residue ADP A 1802
ChainResidue
ATHR766
ALYS768
ATYR770
AGLY795
AGLY797
ALYS798
ATHR799
AILE800
ATRP838
AASN1171
AGLN1173
AILE1200
ABEF1803
AMG1804

site_idAD5
Number of Residues5
Detailsbinding site for residue BEF A 1803
ChainResidue
AASN1171
AARG1196
AARG1199
AADP1802
AMG1804

site_idAD6
Number of Residues3
Detailsbinding site for residue MG A 1804
ChainResidue
AGLU895
AADP1802
ABEF1803

Functional Information from PROSITE/UniProt
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
TALA21-VAL27

site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
SGLY14-HIS18

site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
RLYS14-LEU20

site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
ChainResidueDetails
UARG89-GLY111

site_idPS00633
Number of Residues58
DetailsBROMODOMAIN_1 Bromodomain signature. SdiFlskpSkalyp..DYYmiIkypVafdnInthietla..Ynslketlqdfhl.IfsNAriY
ChainResidueDetails
ASER1573-TYR1630

site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
RPRO66-ILE74

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine","evidences":[{"source":"UniProtKB","id":"P68431","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P84228","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues4
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P84243","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues2
DetailsModified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues2
DetailsLipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues4
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues4
DetailsModified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine; by PAK2","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues4
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues2
DetailsModified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI19
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI20
Number of Residues2
DetailsModified residue: {"description":"N6-(2-hydroxyisobutyryl)lysine; alternate","evidences":[{"source":"UniProtKB","id":"P0C0S8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI21
Number of Residues4
DetailsModified residue: {"description":"N6-(2-hydroxyisobutyryl)lysine","evidences":[{"source":"UniProtKB","id":"P0C0S8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI22
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"P0C0S8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI23
Number of Residues2
DetailsModified residue: {"description":"N5-methylglutamine","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI24
Number of Residues2
DetailsModified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"UniProtKB","id":"P0C0S8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI25
Number of Residues6
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI26
Number of Residues2
DetailsGlycosylation: {"description":"O-linked (GlcNAc) serine","evidences":[{"source":"UniProtKB","id":"P62807","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI27
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P0C1H4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI28
Number of Residues165
DetailsDomain: {"description":"Helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI29
Number of Residues163
DetailsDomain: {"description":"Helicase C-terminal","evidences":[{"source":"PROSITE-ProRule","id":"PRU00542","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI30
Number of Residues3
DetailsMotif: {"description":"DEGH box"}
ChainResidueDetails

site_idSWS_FT_FI31
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI32
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI33
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI34
Number of Residues17
DetailsZinc finger: {"description":"C4-type"}
ChainResidueDetails

site_idSWS_FT_FI35
Number of Residues194
DetailsDomain: {"description":"SWIRM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00247","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI36
Number of Residues56
DetailsRegion: {"description":"Leucine-zipper"}
ChainResidueDetails

site_idSWS_FT_FI37
Number of Residues51
DetailsDomain: {"description":"SANT","evidences":[{"source":"PROSITE-ProRule","id":"PRU00624","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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