6UCQ

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, EB (1A, 2A)	23S Ribosomal RNA	polymer	2915	948021.6	2		Thermus thermophilus HB8
2	B, FB (1B, 2B)	5S Ribosomal RNA	polymer	121	39188.4	2	GenBank (AP008226.1)	Thermus thermophilus HB8
3	C, GB (1D, 2D)	50S ribosomal protein L2	polymer	276	30532.6	2	UniProt (P60405) Pfam (PF00181) Pfam (PF03947)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4	D, HB (1E, 2E)	50S ribosomal protein L3	polymer	206	22450.2	2	UniProt (Q5SHN8) Pfam (PF00297)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5	E, IB (1F, 2F)	50S ribosomal protein L4	polymer	210	23271.9	2	UniProt (Q5SHN9) Pfam (PF00573)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	L1e
6	F, JB (1G, 2G)	50S ribosomal protein L5	polymer	182	21061.6	2	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
7	G, KB (1H, 2H)	50S ribosomal protein L6	polymer	180	19568.9	2	UniProt (P0DOY8) Pfam (PF00347)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8	H, LB (1N, 2N)	50S ribosomal protein L13	polymer	140	15927.9	2	UniProt (P60488) Pfam (PF00572)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9	I, MB (1O, 2O)	50S ribosomal protein L14	polymer	122	13323.6	2	UniProt (Q5SHP8) Pfam (PF00238)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10	J, NB (1P, 2P)	50S ribosomal protein L15	polymer	150	16319.1	2	UniProt (Q5SHQ7) Pfam (PF00828)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11	K, OB (1Q, 2Q)	50S ribosomal protein L16	polymer	141	15993.9	2	UniProt (P60489) Pfam (PF00252)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12	L, PB (1R, 2R)	50S ribosomal protein L17	polymer	118	13750.1	2	UniProt (Q9Z9H5) Pfam (PF01196)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13	M, QB (1S, 2S)	50S ribosomal protein L18	polymer	112	12639.8	2	UniProt (Q5SHQ4) Pfam (PF00861)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TL24
14	N, RB (1T, 2T)	50S ribosomal protein L19	polymer	146	17188.8	2	UniProt (P60490) Pfam (PF01245)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15	O, SB (1U, 2U)	50S ribosomal protein L20	polymer	118	13779.3	2	UniProt (P60491) Pfam (PF00453)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16	P, TB (1V, 2V)	50S ribosomal protein L21	polymer	101	11069.2	2	UniProt (P60492) Pfam (PF00829)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17	Q, UB (1W, 2W)	50S ribosomal protein L22	polymer	113	12808.1	2	UniProt (Q5SHP3) Pfam (PF00237)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18	R, VB (1X, 2X)	50S ribosomal protein L23	polymer	96	10759.8	2	UniProt (Q5SHP0) Pfam (PF00276)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19	S, WB (1Y, 2Y)	50S ribosomal protein L24	polymer	110	12085.6	2	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20	T, XB (1Z, 2Z)	50S ribosomal protein L25	polymer	206	23238.6	2	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TL5
21	U, YB (10, 20)	50S ribosomal protein L27	polymer	85	9529.1	2	UniProt (P60493) Pfam (PF01016)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
22	V, ZB (11, 21)	50S ribosomal protein L28	polymer	98	11004.2	2	UniProt (P60494) Pfam (PF00830)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
23	AC, W (12, 22)	50S ribosomal protein L29	polymer	72	8670.3	2	UniProt (Q5SHP6) Pfam (PF00831)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
24	BC, X (13, 23)	50S ribosomal protein L30	polymer	60	6799.1	2	UniProt (Q5SHQ6) Pfam (PF00327)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
25	CC, Y (14, 24)	50S ribosomal protein L31	polymer	71	8300.5	2	UniProt (Q5SJE1) Pfam (PF01197)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26	DC, Z (15, 25)	50S ribosomal protein L32	polymer	60	6722.1	2	UniProt (P80339) Pfam (PF01783)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27	AA, EC (16, 26)	50S ribosomal protein L33	polymer	54	6632.9	2	UniProt (P35871) Pfam (PF00471)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28	BA, FC (17, 27)	50S ribosomal protein L34	polymer	49	6132.4	2	UniProt (P80340) Pfam (PF00468)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
29	CA, GC (18, 28)	50S ribosomal protein L35	polymer	65	7506.2	2	UniProt (Q5SKU1) Pfam (PF01632)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
30	DA, HC (19, 29)	50S ribosomal protein L36	polymer	37	4435.4	2	UniProt (Q5SHR2) Pfam (PF00444)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Ribosomal protein B
31	EA, IC (1a, 2a)	16S Ribosomal RNA	polymer	1521	493864.6	2		Thermus thermophilus HB8
32	FA, JC (1b, 2b)	30S ribosomal protein S2	polymer	256	29317.7	2	UniProt (P80371) Pfam (PF00318)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33	GA, KC (1c, 2c)	30S ribosomal protein S3	polymer	239	26751.1	2	UniProt (P80372) Pfam (PF07650) Pfam (PF00189)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
34	HA, LC (1d, 2d)	30S ribosomal protein S4	polymer	209	24373.4	2	UniProt (P80373) Pfam (PF00163) Pfam (PF01479)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
35	IA, MC (1e, 2e)	30S ribosomal protein S5	polymer	162	17583.4	2	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
36	JA, NC (1f, 2f)	30S ribosomal protein S6	polymer	101	11988.8	2	UniProt (Q5SLP8) Pfam (PF01250)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TS9
37	KA, OC (1g, 2g)	30S ribosomal protein S7	polymer	156	18051.0	2	UniProt (P17291) Pfam (PF00177)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38	LA, PC (1h, 2h)	30S ribosomal protein S8	polymer	138	15868.6	2	UniProt (P0DOY9) Pfam (PF00410)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
39	MA, QC (1i, 2i)	30S ribosomal protein S9	polymer	128	14410.6	2	UniProt (P80374) Pfam (PF00380)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
40	NA, RC (1j, 2j)	30S ribosomal protein S10	polymer	105	11955.0	2	UniProt (Q5SHN7) Pfam (PF00338)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41	OA, SC (1k, 2k)	30S ribosomal protein S11	polymer	129	13737.9	2	UniProt (P80376) Pfam (PF00411)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42	PA, TC (1l, 2l)	30S ribosomal protein S12	polymer	132	14683.5	2	UniProt (Q5SHN3) Pfam (PF00164)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43	QA, UC (1m, 2m)	30S ribosomal protein S13	polymer	126	14338.9	2	UniProt (P80377) Pfam (PF00416)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
44	RA, VC (1n, 2n)	30S ribosomal protein S14 type Z	polymer	61	7158.7	2	UniProt (P0DOY6) Pfam (PF00253)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45	SA, WC (1o, 2o)	30S ribosomal protein S15	polymer	89	10578.4	2	UniProt (Q5SJ76) Pfam (PF00312)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
46	TA, XC (1p, 2p)	30S ribosomal protein S16	polymer	88	10410.0	2	UniProt (Q5SJH3) Pfam (PF00886)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47	UA, YC (1q, 2q)	30S ribosomal protein S17	polymer	105	12325.7	2	UniProt (P0DOY7) Pfam (PF00366)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48	VA, ZC (1r, 2r)	30S ribosomal protein S18	polymer	88	10258.3	2	UniProt (Q5SLQ0) Pfam (PF01084)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
49	AD, WA (1s, 2s)	30S ribosomal protein S19	polymer	93	10605.5	2	UniProt (Q5SHP2) Pfam (PF00203)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50	BD, XA (1t, 2t)	30S ribosomal protein S20	polymer	106	11736.1	2	UniProt (P80380) Pfam (PF01649)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51	CD, YA (1u, 2u)	30S ribosomal protein Thx	polymer	27	3350.0	2	UniProt (Q5SIH3) Pfam (PF17070)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	S31
52	DD, ZA (1v, 2v)	50S ribosomal protein L9,Elongation factor G	polymer	758	84416.8	2	UniProt (Q5SLQ1) UniProt (Q5SHN5) Pfam (PF01281) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	EF-G
53	AB, ED (1w, 2w)	Ribosome-recycling factor	polymer	185	21029.1	2	UniProt (Q9WX76) Pfam (PF01765)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	RRF,Ribosome-releasing factor
54	BB, CB, FD, GD (1x, 1y, 2x, 2y)	P-site and E-site tRNAs	polymer	76	24645.9	4		Escherichia coli
55	DB, HD (1z, 2z)	mRNA	polymer	21	6792.2	2		synthetic construct
56	AAA, AAB, AAC, AAD, ABA... (1A, 1a, 2A, 2a, 2h...)	MAGNESIUM ION	non-polymer		24.3	2873	Chemie (MG)
57	DVA, DWA, EUC, GUC, IUC... (1Y, 19, 24, 25, 26...)	ZINC ION	non-polymer		65.4	12	Chemie (ZN)
58	LHD, XIB (2d, 1d)	IRON/SULFUR CLUSTER	non-polymer		351.6	2	Chemie (SF4)
59	OJD, VJB (2v, 1v)	GUANOSINE-5'-DIPHOSPHATE	non-polymer		443.2	2	Chemie (GDP)
60	FKB (2A)	POTASSIUM ION	non-polymer		39.1	1	Chemie (K)

Sequence modifications

1v, 2v: -66 - 7 (UniProt: Q5SLQ1)
1v, 2v: 8 - 691 (UniProt: Q5SHN5)

Contents of the asymmetric unit

Polymers	Number of chains	112
	Total formula weight	4627176.1
Non-Polymers*	Number of molecules	2890
	Total formula weight	72242.0
All*	Total formula weight	4699418.1

*Water molecules are not included.