6U7K
Prefusion structure of PEDV spike
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1399 | 152906.9 | 3 | UniProt (Q91AV1) Pfam (PF01600) Pfam (PF19209) Pfam (PF01601) In PDB | Porcine epidemic diarrhea virus (strain CV777) (PEDV) | S glycoprotein,E2,Peplomer protein |
2 | D, I, N | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 3 | In PDB GlyTouCan (G56014GC) | |||
3 | E, F, G, H, J... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
4 | A, C, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 39 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1319 (UniProt: Q91AV1)
PDB | External Database | Details |
---|---|---|
Gly 1320 | - | expression tag |
Ser 1321 | - | expression tag |
Gly 1322 | - | expression tag |
Tyr 1323 | - | expression tag |
Ile 1324 | - | expression tag |
Pro 1325 | - | expression tag |
Glu 1326 | - | expression tag |
Ala 1327 | - | expression tag |
Pro 1328 | - | expression tag |
Arg 1329 | - | expression tag |
Asp 1330 | - | expression tag |
Gly 1331 | - | expression tag |
Gln 1332 | - | expression tag |
Ala 1333 | - | expression tag |
Tyr 1334 | - | expression tag |
Val 1335 | - | expression tag |
Arg 1336 | - | expression tag |
Lys 1337 | - | expression tag |
Asp 1338 | - | expression tag |
Gly 1339 | - | expression tag |
Glu 1340 | - | expression tag |
Trp 1341 | - | expression tag |
Val 1342 | - | expression tag |
Leu 1343 | - | expression tag |
Leu 1344 | - | expression tag |
Ser 1345 | - | expression tag |
Thr 1346 | - | expression tag |
Phe 1347 | - | expression tag |
Leu 1348 | - | expression tag |
Gly 1349 | - | expression tag |
Arg 1350 | - | expression tag |
Ser 1351 | - | expression tag |
Leu 1352 | - | expression tag |
Glu 1353 | - | expression tag |
Val 1354 | - | expression tag |
Leu 1355 | - | expression tag |
Phe 1356 | - | expression tag |
Gln 1357 | - | expression tag |
Gly 1358 | - | expression tag |
Pro 1359 | - | expression tag |
Gly 1360 | - | expression tag |
His 1361 | - | expression tag |
His 1362 | - | expression tag |
His 1363 | - | expression tag |
His 1364 | - | expression tag |
His 1365 | - | expression tag |
His 1366 | - | expression tag |
His 1367 | - | expression tag |
His 1368 | - | expression tag |
Ser 1369 | - | expression tag |
Ala 1370 | - | expression tag |
Trp 1371 | - | expression tag |
Ser 1372 | - | expression tag |
His 1373 | - | expression tag |
Pro 1374 | - | expression tag |
Gln 1375 | - | expression tag |
Phe 1376 | - | expression tag |
Glu 1377 | - | expression tag |
Lys 1378 | - | expression tag |
Gly 1379 | - | expression tag |
Gly 1380 | - | expression tag |
Gly 1381 | - | expression tag |
Ser 1382 | - | expression tag |
Gly 1383 | - | expression tag |
Gly 1384 | - | expression tag |
Gly 1385 | - | expression tag |
Gly 1386 | - | expression tag |
Ser 1387 | - | expression tag |
Gly 1388 | - | expression tag |
Gly 1389 | - | expression tag |
Ser 1390 | - | expression tag |
Ala 1391 | - | expression tag |
Trp 1392 | - | expression tag |
Ser 1393 | - | expression tag |
His 1394 | - | expression tag |
Pro 1395 | - | expression tag |
Gln 1396 | - | expression tag |
Phe 1397 | - | expression tag |
Glu 1398 | - | expression tag |
Lys 1399 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 458720.7 | |
Branched | Number of molecules | 15 |
Total formula weight | 8311.7 | |
Non-Polymers* | Number of molecules | 39 |
Total formula weight | 8627.1 | |
All* | Total formula weight | 475659.5 |