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6TXA

Crystal structure of tetrameric human D137N-SAMHD1 (residues 109-626) with XTP, dGMPNPP and Mg

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D, E...Deoxynucleoside triphosphate triphosphohydrolase SAMHD1polymer52060207.816UniProt (Q9Y3Z3)
Pfam (PF01966)
In PDB
Homo sapiens (Human)dNTPase,Dendritic cell-derived IFNG-induced protein,DCIP,Monocyte protein 5,MOP-5,SAM domain and HD domain-containing protein 1,hSAMHD1
2L, I, F, C, P...FE (III) IONnon-polymer55.816Chemie (FE)
3B, O, L, I, F...MAGNESIUM IONnon-polymer24.348Chemie (MG)
4E, B, O, L, C...2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosinenon-polymer506.232Chemie (XG4)
5H, E, B, O, L...[[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphatenon-polymer524.216Chemie (CZF)
6K, H, E, B, O...SULFATE IONnon-polymer96.115Chemie (SO4)
Sequence modifications
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P: 109 - 626 (UniProt: Q9Y3Z3)
PDBExternal DatabaseDetails
Gly 107-expression tag
Ser 108-expression tag
Asn 137Asp 137engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains16
Total formula weight963325.1
Non-Polymers*Number of molecules127
Total formula weight28086.0
All*Total formula weight991411.1
*Water molecules are not included.

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PDB entries from 2024-06-12

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