6TMF
Structure of an archaeal ABCE1-bound ribosomal post-splitting complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S ribosomal RNA | polymer | 1485 | 482205.5 | 1 | GenBank (1214542111) | Thermococcus celer Vu 13 = JCM 8558 | |
| 2 | B (B) | 30S ribosomal protein S2 | polymer | 195 | 22297.9 | 1 | UniProt (A0A218NZR2) Pfam (PF00318) | Thermococcus celer Vu 13 = JCM 8558 | |
| 3 | C (C) | 30S ribosomal protein S3 | polymer | 193 | 21707.4 | 1 | UniProt (A0A218NZU7) Pfam (PF07650) Pfam (PF00189) | Thermococcus celer Vu 13 = JCM 8558 | |
| 4 | D (D) | 30S ribosomal protein S3Ae | polymer | 184 | 21588.2 | 1 | UniProt (A0A218P0R0) Pfam (PF01015) | Thermococcus celer Vu 13 = JCM 8558 | Ribosomal protein S1e |
| 5 | E (E) | 30S ribosomal protein S4 | polymer | 178 | 20975.3 | 1 | UniProt (A0A218NZV3) Pfam (PF01479) | Thermococcus celer Vu 13 = JCM 8558 | |
| 6 | F (F) | 30S ribosomal protein S4e | polymer | 241 | 27849.6 | 1 | UniProt (A0A218NZX1) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) | Thermococcus celer Vu 13 = JCM 8558 | |
| 7 | G (G) | 30S ribosomal protein S5 | polymer | 220 | 24543.5 | 1 | UniProt (A0A218P4N5) Pfam (PF00333) Pfam (PF03719) | Thermococcus celer Vu 13 = JCM 8558 | |
| 8 | H (H) | 30S ribosomal protein S6e | polymer | 125 | 13829.0 | 1 | UniProt (A0A218P2W6) Pfam (PF01092) | Thermococcus celer Vu 13 = JCM 8558 | |
| 9 | I (I) | 30S ribosomal protein S7 | polymer | 214 | 24287.2 | 1 | UniProt (A0A218P4K4) Pfam (PF00177) | Thermococcus celer Vu 13 = JCM 8558 | |
| 10 | J (J) | 30S ribosomal protein S8 | polymer | 129 | 14493.9 | 1 | UniProt (A0A218NZT7) Pfam (PF00410) | Thermococcus celer Vu 13 = JCM 8558 | |
| 11 | K (K) | 30S ribosomal protein S8e | polymer | 126 | 14164.6 | 1 | UniProt (A0A218P4F6) Pfam (PF01201) | Thermococcus celer Vu 13 = JCM 8558 | |
| 12 | L (L) | 30S ribosomal protein S9 | polymer | 132 | 14893.5 | 1 | UniProt (A0A218NZS6) Pfam (PF00380) | Thermococcus celer Vu 13 = JCM 8558 | |
| 13 | M (M) | 30S ribosomal protein S10 | polymer | 102 | 11731.7 | 1 | UniProt (A0A218P3Q8) Pfam (PF00338) | Thermococcus celer Vu 13 = JCM 8558 | |
| 14 | N (N) | 30S ribosomal protein S11 | polymer | 133 | 14308.4 | 1 | UniProt (A0A218NZU0) Pfam (PF00411) | Thermococcus celer Vu 13 = JCM 8558 | |
| 15 | O (O) | 30S ribosomal protein S12 | polymer | 144 | 16101.1 | 1 | UniProt (A0A218P4I2) Pfam (PF00164) | Thermococcus celer Vu 13 = JCM 8558 | |
| 16 | P (P) | 30S ribosomal protein S13 | polymer | 136 | 15768.3 | 1 | UniProt (A0A218NZT2) Pfam (PF00416) | Thermococcus celer Vu 13 = JCM 8558 | |
| 17 | Q (Q) | 30S ribosomal protein S14 type Z | polymer | 56 | 6588.0 | 1 | UniProt (A0A218NZW1) Pfam (PF00253) | Thermococcus celer Vu 13 = JCM 8558 | |
| 18 | R (R) | 30S ribosomal protein S15 | polymer | 151 | 17475.7 | 1 | UniProt (A0A218P0Q1) Pfam (PF08069) Pfam (PF00312) | Thermococcus celer Vu 13 = JCM 8558 | |
| 19 | S (S) | 30S ribosomal protein S17 | polymer | 111 | 12996.1 | 1 | UniProt (A0A218NZX3) Pfam (PF00366) | Thermococcus celer Vu 13 = JCM 8558 | |
| 20 | T (T) | 30S ribosomal protein S17e | polymer | 64 | 7724.0 | 1 | UniProt (A0A218P2C1) Pfam (PF00833) | Thermococcus celer Vu 13 = JCM 8558 | |
| 21 | U (U) | 30S ribosomal protein S19P | polymer | 115 | 13512.0 | 1 | UniProt (A0A218P4M9) Pfam (PF00203) | Thermococcus celer Vu 13 = JCM 8558 | |
| 22 | V (V) | 30S ribosomal protein S19e | polymer | 149 | 17203.7 | 1 | UniProt (A0A218P4W7) Pfam (PF01090) | Thermococcus celer Vu 13 = JCM 8558 | |
| 23 | W (W) | RNA-binding protein | polymer | 56 | 6292.4 | 1 | UniProt (A0A218P055) Pfam (PF07754) | Thermococcus celer Vu 13 = JCM 8558 | |
| 24 | X (X) | 30S ribosomal protein S24e | polymer | 97 | 11406.2 | 1 | UniProt (A0A218P0B9) Pfam (PF01282) | Thermococcus celer Vu 13 = JCM 8558 | |
| 25 | Y (Y) | 30S ribosomal protein S27e | polymer | 63 | 6835.2 | 1 | UniProt (A0A218NZS1) Pfam (PF01667) | Thermococcus celer Vu 13 = JCM 8558 | |
| 26 | Z (Z) | 30S ribosomal protein S27ae | polymer | 50 | 5995.1 | 1 | UniProt (A0A218P0A5) Pfam (PF01599) | Thermococcus celer Vu 13 = JCM 8558 | |
| 27 | AA (a) | 30S ribosomal protein S28e | polymer | 66 | 7356.5 | 1 | UniProt (A0A218P147) Pfam (PF01200) | Thermococcus celer Vu 13 = JCM 8558 | |
| 28 | BA (b) | 50S ribosomal protein L7Ae | polymer | 123 | 13351.4 | 1 | UniProt (A0A218P167) Pfam (PF01248) | Thermococcus celer Vu 13 = JCM 8558 | Ribosomal protein L8e |
| 29 | CA (c) | LSU ribosomal protein L41E | polymer | 37 | 5023.4 | 1 | UniProt (A0A218P2S9) | Thermococcus celer Vu 13 = JCM 8558 | |
| 30 | DA (d) | ATPase | polymer | 594 | 67201.5 | 1 | UniProt (A0A0E3MFT8) Pfam (PF04068) Pfam (PF00037) Pfam (PF00005) UniProt (by SIFTS) (Q980K5) | Saccharolobus solfataricus | Ribosome biogenesis/translation initiation ATPase RLI |
| 31 | AB, BB, CB, DB, EA... (A, d) | MAGNESIUM ION | non-polymer | 24.3 | 29 | Chemie (MG) | |||
| 32 | FB, GB, HB, IB (Q, W, Y) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 33 | JB, KB (d) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
| 34 | LB, NB (d) | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | non-polymer | 506.2 | 2 | Chemie (ANP) |
Sequence modifications
d: 1 - 594 (UniProt: A0A0E3MFT8)
| PDB | External Database | Details |
|---|---|---|
| Ala 238 | Glu 238 | engineered mutation |
| Ala 485 | Glu 485 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 30 |
| Total formula weight | 959706.1 | |
| Non-Polymers* | Number of molecules | 37 |
| Total formula weight | 2682.2 | |
| All* | Total formula weight | 962388.3 |
