6TMF
Structure of an archaeal ABCE1-bound ribosomal post-splitting complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
B | 0003735 | molecular_function | structural constituent of ribosome |
B | 0005840 | cellular_component | ribosome |
B | 0006412 | biological_process | translation |
B | 0015935 | cellular_component | small ribosomal subunit |
B | 1990904 | cellular_component | ribonucleoprotein complex |
C | 0003676 | molecular_function | nucleic acid binding |
C | 0003723 | molecular_function | RNA binding |
C | 0003735 | molecular_function | structural constituent of ribosome |
C | 0005840 | cellular_component | ribosome |
C | 0006412 | biological_process | translation |
C | 0015935 | cellular_component | small ribosomal subunit |
C | 0019843 | molecular_function | rRNA binding |
C | 0022627 | cellular_component | cytosolic small ribosomal subunit |
C | 1990904 | cellular_component | ribonucleoprotein complex |
D | 0003735 | molecular_function | structural constituent of ribosome |
D | 0005840 | cellular_component | ribosome |
D | 0006412 | biological_process | translation |
D | 1990904 | cellular_component | ribonucleoprotein complex |
E | 0003723 | molecular_function | RNA binding |
E | 0003735 | molecular_function | structural constituent of ribosome |
E | 0005840 | cellular_component | ribosome |
E | 0006412 | biological_process | translation |
E | 0015935 | cellular_component | small ribosomal subunit |
E | 0019843 | molecular_function | rRNA binding |
E | 0042274 | biological_process | ribosomal small subunit biogenesis |
E | 0043226 | cellular_component | organelle |
E | 1990904 | cellular_component | ribonucleoprotein complex |
F | 0003723 | molecular_function | RNA binding |
F | 0003735 | molecular_function | structural constituent of ribosome |
F | 0005840 | cellular_component | ribosome |
F | 0006412 | biological_process | translation |
F | 0019843 | molecular_function | rRNA binding |
F | 0022627 | cellular_component | cytosolic small ribosomal subunit |
F | 1990904 | cellular_component | ribonucleoprotein complex |
G | 0003723 | molecular_function | RNA binding |
G | 0003735 | molecular_function | structural constituent of ribosome |
G | 0005840 | cellular_component | ribosome |
G | 0006412 | biological_process | translation |
G | 0015935 | cellular_component | small ribosomal subunit |
G | 0019843 | molecular_function | rRNA binding |
G | 0022627 | cellular_component | cytosolic small ribosomal subunit |
G | 1990904 | cellular_component | ribonucleoprotein complex |
H | 0003735 | molecular_function | structural constituent of ribosome |
H | 0005840 | cellular_component | ribosome |
H | 0006412 | biological_process | translation |
H | 1990904 | cellular_component | ribonucleoprotein complex |
I | 0003723 | molecular_function | RNA binding |
I | 0003735 | molecular_function | structural constituent of ribosome |
I | 0005840 | cellular_component | ribosome |
I | 0006412 | biological_process | translation |
I | 0015935 | cellular_component | small ribosomal subunit |
I | 0019843 | molecular_function | rRNA binding |
I | 1990904 | cellular_component | ribonucleoprotein complex |
J | 0003723 | molecular_function | RNA binding |
J | 0003735 | molecular_function | structural constituent of ribosome |
J | 0005840 | cellular_component | ribosome |
J | 0006412 | biological_process | translation |
J | 0019843 | molecular_function | rRNA binding |
J | 1990904 | cellular_component | ribonucleoprotein complex |
K | 0003735 | molecular_function | structural constituent of ribosome |
K | 0005840 | cellular_component | ribosome |
K | 0006412 | biological_process | translation |
K | 1990904 | cellular_component | ribonucleoprotein complex |
L | 0000462 | biological_process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
L | 0003723 | molecular_function | RNA binding |
L | 0003735 | molecular_function | structural constituent of ribosome |
L | 0005840 | cellular_component | ribosome |
L | 0006412 | biological_process | translation |
L | 0015935 | cellular_component | small ribosomal subunit |
L | 0022627 | cellular_component | cytosolic small ribosomal subunit |
L | 1990904 | cellular_component | ribonucleoprotein complex |
M | 0000049 | molecular_function | tRNA binding |
M | 0003723 | molecular_function | RNA binding |
M | 0003735 | molecular_function | structural constituent of ribosome |
M | 0005840 | cellular_component | ribosome |
M | 0006412 | biological_process | translation |
M | 0015935 | cellular_component | small ribosomal subunit |
M | 1990904 | cellular_component | ribonucleoprotein complex |
N | 0003723 | molecular_function | RNA binding |
N | 0003735 | molecular_function | structural constituent of ribosome |
N | 0005840 | cellular_component | ribosome |
N | 0006412 | biological_process | translation |
N | 0019843 | molecular_function | rRNA binding |
N | 1990904 | cellular_component | ribonucleoprotein complex |
O | 0003723 | molecular_function | RNA binding |
O | 0003735 | molecular_function | structural constituent of ribosome |
O | 0005840 | cellular_component | ribosome |
O | 0006412 | biological_process | translation |
O | 0015935 | cellular_component | small ribosomal subunit |
O | 0019843 | molecular_function | rRNA binding |
O | 1990904 | cellular_component | ribonucleoprotein complex |
P | 0003676 | molecular_function | nucleic acid binding |
P | 0003723 | molecular_function | RNA binding |
P | 0003735 | molecular_function | structural constituent of ribosome |
P | 0005829 | cellular_component | cytosol |
P | 0005840 | cellular_component | ribosome |
P | 0006412 | biological_process | translation |
P | 0015935 | cellular_component | small ribosomal subunit |
P | 0019843 | molecular_function | rRNA binding |
P | 1990904 | cellular_component | ribonucleoprotein complex |
Q | 0002181 | biological_process | cytoplasmic translation |
Q | 0003723 | molecular_function | RNA binding |
Q | 0003735 | molecular_function | structural constituent of ribosome |
Q | 0005840 | cellular_component | ribosome |
Q | 0006412 | biological_process | translation |
Q | 0008270 | molecular_function | zinc ion binding |
Q | 0015935 | cellular_component | small ribosomal subunit |
Q | 0019843 | molecular_function | rRNA binding |
Q | 0022627 | cellular_component | cytosolic small ribosomal subunit |
Q | 0046872 | molecular_function | metal ion binding |
Q | 1990904 | cellular_component | ribonucleoprotein complex |
R | 0003735 | molecular_function | structural constituent of ribosome |
R | 0005840 | cellular_component | ribosome |
R | 0006412 | biological_process | translation |
R | 0022627 | cellular_component | cytosolic small ribosomal subunit |
R | 0070181 | molecular_function | small ribosomal subunit rRNA binding |
R | 1990904 | cellular_component | ribonucleoprotein complex |
S | 0003723 | molecular_function | RNA binding |
S | 0003735 | molecular_function | structural constituent of ribosome |
S | 0005840 | cellular_component | ribosome |
S | 0006412 | biological_process | translation |
S | 0019843 | molecular_function | rRNA binding |
S | 0022627 | cellular_component | cytosolic small ribosomal subunit |
S | 1990904 | cellular_component | ribonucleoprotein complex |
T | 0003735 | molecular_function | structural constituent of ribosome |
T | 0005829 | cellular_component | cytosol |
T | 0005840 | cellular_component | ribosome |
T | 0006412 | biological_process | translation |
T | 1990904 | cellular_component | ribonucleoprotein complex |
U | 0003723 | molecular_function | RNA binding |
U | 0003735 | molecular_function | structural constituent of ribosome |
U | 0005840 | cellular_component | ribosome |
U | 0006412 | biological_process | translation |
U | 0015935 | cellular_component | small ribosomal subunit |
V | 0000028 | biological_process | ribosomal small subunit assembly |
V | 0003723 | molecular_function | RNA binding |
V | 0003735 | molecular_function | structural constituent of ribosome |
V | 0005840 | cellular_component | ribosome |
V | 0006412 | biological_process | translation |
V | 0022627 | cellular_component | cytosolic small ribosomal subunit |
V | 1990904 | cellular_component | ribonucleoprotein complex |
X | 0003735 | molecular_function | structural constituent of ribosome |
X | 0005840 | cellular_component | ribosome |
X | 0006412 | biological_process | translation |
X | 1990904 | cellular_component | ribonucleoprotein complex |
Y | 0003735 | molecular_function | structural constituent of ribosome |
Y | 0005840 | cellular_component | ribosome |
Y | 0006412 | biological_process | translation |
Y | 0008270 | molecular_function | zinc ion binding |
Y | 0046872 | molecular_function | metal ion binding |
Y | 1990904 | cellular_component | ribonucleoprotein complex |
Z | 0003735 | molecular_function | structural constituent of ribosome |
Z | 0005840 | cellular_component | ribosome |
Z | 0006412 | biological_process | translation |
Z | 0008270 | molecular_function | zinc ion binding |
Z | 0046872 | molecular_function | metal ion binding |
Z | 1990904 | cellular_component | ribonucleoprotein complex |
a | 0000028 | biological_process | ribosomal small subunit assembly |
a | 0003735 | molecular_function | structural constituent of ribosome |
a | 0005840 | cellular_component | ribosome |
a | 0006412 | biological_process | translation |
a | 0022627 | cellular_component | cytosolic small ribosomal subunit |
a | 0030490 | biological_process | maturation of SSU-rRNA |
a | 1990904 | cellular_component | ribonucleoprotein complex |
b | 0001682 | biological_process | tRNA 5'-leader removal |
b | 0003723 | molecular_function | RNA binding |
b | 0003735 | molecular_function | structural constituent of ribosome |
b | 0004526 | molecular_function | ribonuclease P activity |
b | 0005737 | cellular_component | cytoplasm |
b | 0005840 | cellular_component | ribosome |
b | 0006412 | biological_process | translation |
b | 0008033 | biological_process | tRNA processing |
b | 0019843 | molecular_function | rRNA binding |
b | 0042254 | biological_process | ribosome biogenesis |
b | 1990904 | cellular_component | ribonucleoprotein complex |
c | 0005840 | cellular_component | ribosome |
d | 0000166 | molecular_function | nucleotide binding |
d | 0005506 | molecular_function | iron ion binding |
d | 0005515 | molecular_function | protein binding |
d | 0005524 | molecular_function | ATP binding |
d | 0006413 | biological_process | translational initiation |
d | 0006415 | biological_process | translational termination |
d | 0016491 | molecular_function | oxidoreductase activity |
d | 0016887 | molecular_function | ATP hydrolysis activity |
d | 0043024 | molecular_function | ribosomal small subunit binding |
d | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 1 |
Details | binding site for residue MG A 1501 |
Chain | Residue |
A | G16 |
site_id | AC2 |
Number of Residues | 1 |
Details | binding site for residue MG A 1502 |
Chain | Residue |
A | C27 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue MG A 1503 |
Chain | Residue |
A | U91 |
site_id | AC4 |
Number of Residues | 1 |
Details | binding site for residue MG A 1504 |
Chain | Residue |
A | A47 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue MG A 1505 |
Chain | Residue |
A | G805 |
A | G816 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue MG A 1506 |
Chain | Residue |
A | G832 |
A | C17 |
A | U503 |
A | U831 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue MG A 1507 |
Chain | Residue |
A | A725 |
A | A737 |
A | C1467 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue MG A 1508 |
Chain | Residue |
A | A1445 |
A | A1446 |
A | G1454 |
A | C1467 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue MG A 1509 |
Chain | Residue |
A | A1446 |
A | G1451 |
A | A1453 |
A | G1454 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue MG A 1510 |
Chain | Residue |
A | A1445 |
A | A1446 |
A | G1451 |
site_id | AD2 |
Number of Residues | 3 |
Details | binding site for residue MG A 1511 |
Chain | Residue |
A | A93 |
A | G94 |
A | C274 |
site_id | AD3 |
Number of Residues | 1 |
Details | binding site for residue MG A 1512 |
Chain | Residue |
A | A190 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue MG A 1513 |
Chain | Residue |
A | C49 |
A | C337 |
A | A338 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue MG A 1514 |
Chain | Residue |
A | U513 |
A | A514 |
A | A515 |
A | A516 |
site_id | AD6 |
Number of Residues | 1 |
Details | binding site for residue MG A 1515 |
Chain | Residue |
A | A550 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue MG A 1516 |
Chain | Residue |
A | U882 |
A | A883 |
A | C1291 |
site_id | AD8 |
Number of Residues | 2 |
Details | binding site for residue MG A 1517 |
Chain | Residue |
A | A885 |
A | A886 |
site_id | AD9 |
Number of Residues | 1 |
Details | binding site for residue MG A 1518 |
Chain | Residue |
A | G924 |
site_id | AE1 |
Number of Residues | 2 |
Details | binding site for residue MG A 1519 |
Chain | Residue |
A | C1010 |
A | G1035 |
site_id | AE2 |
Number of Residues | 1 |
Details | binding site for residue MG A 1520 |
Chain | Residue |
A | G1051 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue MG A 1521 |
Chain | Residue |
A | A1106 |
A | C1107 |
A | G1133 |
site_id | AE4 |
Number of Residues | 3 |
Details | binding site for residue MG A 1522 |
Chain | Residue |
A | C995 |
A | G1146 |
A | G1147 |
site_id | AE5 |
Number of Residues | 3 |
Details | binding site for residue MG A 1523 |
Chain | Residue |
A | C995 |
A | A1145 |
A | G1146 |
site_id | AE6 |
Number of Residues | 3 |
Details | binding site for residue MG A 1524 |
Chain | Residue |
A | A1187 |
A | A1248 |
A | C1284 |
site_id | AE7 |
Number of Residues | 3 |
Details | binding site for residue MG A 1525 |
Chain | Residue |
A | C1252 |
A | G1253 |
A | G1254 |
site_id | AE8 |
Number of Residues | 2 |
Details | binding site for residue MG A 1526 |
Chain | Residue |
A | U445 |
A | G446 |
site_id | AE9 |
Number of Residues | 2 |
Details | binding site for residue MG A 1527 |
Chain | Residue |
A | G6 |
A | G7 |
site_id | AF1 |
Number of Residues | 4 |
Details | binding site for residue ZN Q 101 |
Chain | Residue |
Q | CYS21 |
Q | CYS24 |
Q | CYS39 |
Q | CYS42 |
site_id | AF2 |
Number of Residues | 5 |
Details | binding site for residue ZN W 101 |
Chain | Residue |
W | CYS28 |
W | CYS31 |
W | GLY32 |
W | CYS51 |
W | CYS54 |
site_id | AF3 |
Number of Residues | 4 |
Details | binding site for residue ZN W 102 |
Chain | Residue |
W | CYS10 |
W | CYS13 |
W | CYS39 |
W | CYS42 |
site_id | AF4 |
Number of Residues | 4 |
Details | binding site for residue ZN Y 101 |
Chain | Residue |
Y | CYS20 |
Y | ASN25 |
Y | CYS39 |
Y | CYS42 |
site_id | AF5 |
Number of Residues | 8 |
Details | binding site for residue SF4 d 601 |
Chain | Residue |
d | CYS24 |
d | ILE34 |
d | CYS51 |
d | ILE52 |
d | GLY53 |
d | CYS54 |
d | GLY55 |
d | CYS57 |
site_id | AF6 |
Number of Residues | 8 |
Details | binding site for residue SF4 d 602 |
Chain | Residue |
d | CYS11 |
d | LYS12 |
d | CYS16 |
d | CYS20 |
d | PRO44 |
d | CYS61 |
d | TYR63 |
d | ILE66 |
site_id | AF7 |
Number of Residues | 17 |
Details | binding site for residue ANP d 603 |
Chain | Residue |
d | ASN108 |
d | GLY109 |
d | VAL110 |
d | GLY111 |
d | LYS112 |
d | THR113 |
d | THR114 |
d | GLN167 |
d | HIS269 |
d | ASP459 |
d | SER461 |
d | GLY462 |
d | GLY463 |
d | GLU464 |
d | MG604 |
d | TYR83 |
d | PHE88 |
site_id | AF8 |
Number of Residues | 3 |
Details | binding site for residue MG d 604 |
Chain | Residue |
d | THR113 |
d | GLN167 |
d | ANP603 |
site_id | AF9 |
Number of Residues | 19 |
Details | binding site for residue ANP d 605 |
Chain | Residue |
d | LYS208 |
d | ILE212 |
d | SER214 |
d | GLY215 |
d | GLY216 |
d | TYR242 |
d | LEU353 |
d | PHE356 |
d | ASN377 |
d | GLY378 |
d | ILE379 |
d | GLY380 |
d | LYS381 |
d | THR382 |
d | THR383 |
d | GLN411 |
d | HIS518 |
d | GLU538 |
d | MG606 |
site_id | AG1 |
Number of Residues | 3 |
Details | binding site for residue MG d 606 |
Chain | Residue |
d | THR382 |
d | GLN411 |
d | ANP605 |
Functional Information from PROSITE/UniProt
site_id | PS00018 |
Number of Residues | 13 |
Details | EF_HAND_1 EF-hand calcium-binding domain. DRSGGKAIElsEI |
Chain | Residue | Details |
d | ASP27-ILE39 |
site_id | PS00047 |
Number of Residues | 5 |
Details | HISTONE_H4 Histone H4 signature. GAKRH |
Chain | Residue | Details |
F | GLY5-HIS9 |
site_id | PS00052 |
Number of Residues | 27 |
Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. KgTvneILtkiderGKKdevkeLLnmT |
Chain | Residue | Details |
d | LYS177-THR203 |
site_id | PS00053 |
Number of Residues | 18 |
Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GilIVSTSqGVMthkeAI |
Chain | Residue | Details |
J | GLY100-ILE117 |
site_id | PS00054 |
Number of Residues | 23 |
Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALarA.GLrIgrveDvTPiPHD |
Chain | Residue | Details |
N | ILE104-ASP126 |
site_id | PS00055 |
Number of Residues | 8 |
Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAmR |
Chain | Residue | Details |
O | LYS63-ARG70 |
site_id | PS00056 |
Number of Residues | 13 |
Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDrVlVaEtRPIS |
Chain | Residue | Details |
S | GLY82-SER94 |
site_id | PS00198 |
Number of Residues | 12 |
Details | 4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiGCGiCVkKCP |
Chain | Residue | Details |
d | CYS51-PRO62 |
site_id | PS00228 |
Number of Residues | 4 |
Details | TUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MREI |
Chain | Residue | Details |
S | MET1-ILE4 |
site_id | PS00323 |
Number of Residues | 25 |
Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKefvpveIkeemIGhyLGEFalT |
Chain | Residue | Details |
U | ASN86-THR110 |
site_id | PS00360 |
Number of Residues | 19 |
Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGfmGQaeAarvAiARAL |
Chain | Residue | Details |
L | GLY68-LEU86 |
site_id | PS00361 |
Number of Residues | 16 |
Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AertGVrmsGPIpLPT |
Chain | Residue | Details |
M | ALA27-THR42 |
site_id | PS00362 |
Number of Residues | 31 |
Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. LrkHLemhPkDrhSmrgLqlTeskirrLvkY |
Chain | Residue | Details |
R | LEU98-TYR128 |
site_id | PS00527 |
Number of Residues | 22 |
Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. R.Cgqygpvirvhg.LMLCRhCFR |
Chain | Residue | Details |
Q | ARG23-ARG44 |
site_id | PS00528 |
Number of Residues | 15 |
Details | RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLAaPdqWyIsR |
Chain | Residue | Details |
F | HIS9-ARG23 |
site_id | PS00529 |
Number of Residues | 23 |
Details | RIBOSOMAL_S24E Ribosomal protein S24e signature. FGsrVSrGYAkAYESkermlyiE |
Chain | Residue | Details |
X | PHE60-GLU82 |
site_id | PS00585 |
Number of Residues | 33 |
Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrirFrVlaAVGNrd.GyVGlGighgr.EVgi.AI |
Chain | Residue | Details |
G | GLY71-ILE103 |
site_id | PS00628 |
Number of Residues | 20 |
Details | RIBOSOMAL_S19E Ribosomal protein S19e signature. PehfykaGgsIiRkALQqLE |
Chain | Residue | Details |
V | PRO87-GLU106 |
site_id | PS00632 |
Number of Residues | 25 |
Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LDrRLqtiVYKkglArTprqARqLI |
Chain | Residue | Details |
E | LEU101-ILE125 |
site_id | PS00646 |
Number of Residues | 14 |
Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGiRHelGlpLRGQ |
Chain | Residue | Details |
P | ARG117-GLN130 |
site_id | PS00712 |
Number of Residues | 16 |
Details | RIBOSOMAL_S17E Ribosomal protein S17e signature. VtSKtIRNrIAGYiTK |
Chain | Residue | Details |
T | VAL41-LYS56 |
site_id | PS00961 |
Number of Residues | 9 |
Details | RIBOSOMAL_S28E Ribosomal protein S28e signature. ETEREAReI |
Chain | Residue | Details |
a | GLU58-ILE66 |
site_id | PS00962 |
Number of Residues | 12 |
Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. LdQYLAAGVHIG |
Chain | Residue | Details |
B | LEU8-GLY19 |
site_id | PS00963 |
Number of Residues | 25 |
Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdvLIVtDpraDhqaMkEaieiGIP |
Chain | Residue | Details |
B | PRO111-PRO135 |
site_id | PS01082 |
Number of Residues | 18 |
Details | RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekeIPYiyVpSKkeLG |
Chain | Residue | Details |
b | CYS70-GLY87 |
site_id | PS01168 |
Number of Residues | 33 |
Details | RIBOSOMAL_S27E Ribosomal protein S27e signature. KCidCgneqivFSnPsttvrClvCGatLvePtG |
Chain | Residue | Details |
Y | LYS19-GLY51 |
site_id | PS01191 |
Number of Residues | 13 |
Details | RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. ViGRViEtTLrDL |
Chain | Residue | Details |
D | VAL47-LEU59 |
site_id | PS01193 |
Number of Residues | 20 |
Details | RIBOSOMAL_S8E Ribosomal protein S8e signature. KkpSGGriila.RkKrKrELG |
Chain | Residue | Details |
K | LYS10-GLY29 |