6THG
Cedar Virus attachment glycoprotein (G) in complex with human ephrin-B1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, D, E, F (B, A, E, G, I) | Attachment glycoprotein | polymer | 426 | 48821.0 | 5 | UniProt (A0A185KRV2) Pfam (PF00423) UniProt (by SIFTS) (J7H333) | Cedar virus | |
| 2 | B, G, H, I, J (D, C, F, H, J) | Ephrin-B1 | polymer | 151 | 17248.7 | 5 | UniProt (P98172) Pfam (PF00812) | Homo sapiens (Human) | EFL-3,ELK ligand,ELK-L,EPH-related receptor tyrosine kinase ligand 2,LERK-2 |
| 3 | K, M, N, O, Q... (K, M, N, O, Q...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G15407YE) | |||
| 4 | L, P, R, S, T... (L, P, R, S, T...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 7 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AA, BA, CA, DA, EA... (D, A, E, G, I...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 17 | Chemie (NAG) |
Sequence modifications
B, A, E, G, I: 209 - 622 (UniProt: A0A185KRV2)
D, C, F, H, J: 29 - 167 (UniProt: P98172)
| PDB | External Database | Details |
|---|---|---|
| Glu 206 | - | expression tag |
| Thr 207 | - | expression tag |
| Gly 208 | - | expression tag |
| Gly 623 | - | expression tag |
| Thr 624 | - | expression tag |
| Lys 625 | - | expression tag |
| His 626 | - | expression tag |
| His 627 | - | expression tag |
| His 628 | - | expression tag |
| His 629 | - | expression tag |
| His 630 | - | expression tag |
| His 631 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Glu 26 | - | expression tag |
| Thr 27 | - | expression tag |
| Gly 28 | - | expression tag |
| Gly 168 | - | expression tag |
| Thr 169 | - | expression tag |
| Lys 170 | - | expression tag |
| His 171 | - | expression tag |
| His 172 | - | expression tag |
| His 173 | - | expression tag |
| His 174 | - | expression tag |
| His 175 | - | expression tag |
| His 176 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 330348.2 | |
| Branched | Number of molecules | 13 |
| Total formula weight | 6490.1 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 3760.5 | |
| All* | Total formula weight | 340598.8 |
