Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6T7T

Structure of yeast 80S ribosome stalled on poly(A) tract.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(LA)
60S ribosomal protein L2-Apolymer25127089.21UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
2B
(SA)
40S ribosomal protein S0-Apolymer20622811.11UniProt (B3LI22)
Pfam (PF00318)
UniProt (by SIFTS) (P32905)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Nucleic acid-binding protein NAB1A
3C
(LB)
60S ribosomal protein L3polymer38643719.61UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
4D
(SB)
40S ribosomal protein S1-Apolymer23226314.71UniProt (B3RHV0)
Pfam (PF01015)
UniProt (by SIFTS) (P33442)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
5E
(C2)
18S rRNApolymer1771570585.31Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
6F
(SP)
40S ribosomal protein S15polymer11713265.61UniProt (Q01855)
Pfam (PF00203)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
7G
(SC)
40S ribosomal protein S2polymer21623084.81UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
8H
(SD)
40S ribosomal protein S3polymer22224631.71UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP13,Small ribosomal subunit protein uS3,YS3
9I
(SE)
40S ribosomal protein S4-Apolymer25829167.91UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
10J
(SF)
Rps5ppolymer20622908.31UniProt (A0A1L4AA68)
Pfam (PF00177)
UniProt (by SIFTS) (P26783)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
11K
(SG)
40S ribosomal protein S6-Apolymer22826181.41UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
12L
(SH)
40S ribosomal protein S7-Apolymer18421000.51UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
13M
(SI)
40S ribosomal protein S8polymer18721018.01UniProt (A0A0J9X221)
Pfam (PF01201)
UniProt (by SIFTS) (P0CX39)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
14N
(SJ)
40S ribosomal protein S9-Apolymer18421081.51UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
15O
(SK)
40S ribosomal protein S10-Apolymer9211042.61UniProt (Q08745)
Pfam (PF03501)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein eS10-A
16P
(SL)
40S ribosomal protein S11-Apolymer14416460.31UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
17Q
(SM)
40S ribosomal protein S12polymer12113028.01UniProt (P48589)
Pfam (PF01248)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein eS12
18R
(SN)
40S ribosomal protein S13polymer15016928.71UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
19S
(SO)
40S ribosomal protein S14-Bpolymer12713446.41UniProt (P39516)
Pfam (PF00411)
UniProt (by SIFTS) (P06367)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP59B,Small ribosomal subunit protein uS11-B
20T
(SQ)
40S ribosomal protein S16-Apolymer14115659.21UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
21U
(SR)
40S ribosomal protein S17-Bpolymer12514268.51UniProt (P14127)
Pfam (PF00833)
UniProt (by SIFTS) (P02407)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP51B,Small ribosomal subunit protein eS17-B
22V
(SS)
40S ribosomal protein S18-Apolymer14516940.41UniProt (P0CX55)
Pfam (PF00416)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein uS13-A
23W
(ST)
40S ribosomal protein S19-Apolymer14315810.91UniProt (P07280)
Pfam (PF01090)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
24X
(SU)
40S ribosomal protein S20polymer10011363.31UniProt (P38701)
Pfam (PF00338)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein uS10
25Y
(SV)
40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
26Z
(SW)
40S ribosomal protein S22-Apolymer12914518.91UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
27AA
(SX)
40S ribosomal protein S23-Apolymer14415942.71UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
28BA
(SY)
40S ribosomal protein S24-Apolymer13415231.61UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP50,Small ribosomal subunit protein eS24-A
29CA
(SZ)
40S ribosomal protein S25-Apolymer829540.31UniProt (Q3E792)
Pfam (PF03297)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
30DA
(Sa)
40S ribosomal protein S26-Bpolymer9711023.01UniProt (P39939)
Pfam (PF01283)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein eS26-B
31EA
(Sb)
40S ribosomal protein S27-Apolymer818762.21UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
32FA
(Sd)
40S ribosomal protein S29-Apolymer536335.31UniProt (P41057)
Pfam (PF00253)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)S36,Small ribosomal subunit protein uS14-A,YS29
33GA
(Se)
40S ribosomal protein S30-Apolymer606779.11UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein eS30-A
34HA
(Sf)
Ubiquitin-40S ribosomal protein S31polymer738388.01UniProt (P05759)
Pfam (PF01599)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
35IA
(Sg)
Guanine nucleotide-binding protein subunit beta-like proteinpolymer31234151.51UniProt (P38011)
Pfam (PF00400)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
36JA
(Sc)
40S ribosomal protein S28-Apolymer637116.31UniProt (Q3E7X9)
Pfam (PF01200)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
37KA
(C4)
5S rRNApolymer12138951.11GenBank (1329886537)Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
38LA
(C3)
5.8S rRNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
39MA
(LC)
60S ribosomal protein L4-Apolymer36139027.91UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
40NA
(LD)
60S ribosomal protein L5polymer29433415.41UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
41OA
(LE)
60S ribosomal protein L6-Bpolymer17519911.41UniProt (P05739)
Pfam (PF01159)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L17,Large ribosomal subunit protein eL6-B,RP18,YL16
42PA
(LF)
60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF00327)
Pfam (PF08079)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
43QA
(LG)
60S ribosomal protein L8-Apolymer23325815.01UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
44RA
(LH)
60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
45SA
(LI)
60S ribosomal protein L10polymer21825080.11UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
46TA
(LJ)
60S ribosomal protein L11-Bpolymer16919266.11UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P0C0W9)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L16,Large ribosomal subunit protein uL5-B,RP39,YL22
47UA
(LL)
60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL13-A
48VA
(LM)
60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL14-A
49WA
(LN)
60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
50XA
(LO)
60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
51YA
(LP)
60S ribosomal protein L17-Apolymer18320458.31UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
52ZA
(LQ)
60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
53AB
(LR)
60S ribosomal protein L19-Apolymer18821631.11UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
54BB
(LS)
60S ribosomal protein L20-Apolymer17120347.71UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
55CB
(LT)
60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL21-A
56DB
(LU)
60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
57EB
(LV)
60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
58FB
(LW)
60S ribosomal protein L24-Apolymer12614617.21UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
59GB
(LX)
60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
60HB
(LY)
60S ribosomal protein L26-Apolymer12514005.51UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
61IB
(LZ)
60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL27-A
62JB
(La)
60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
63KB
(Lb)
60S ribosomal protein L29polymer586560.71UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL29,YL43
64LB
(Lc)
60S ribosomal protein L30polymer9610487.31UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
65MB
(Ld)
60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
66NB
(Le)
60S ribosomal protein L32polymer12714478.11UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL32
67OB
(Lf)
60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
68PB
(Lg)
60S ribosomal protein L34-Apolymer11212608.81UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL34-A
69QB
(Lh)
60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein uL29-A
70RB
(Li)
60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
71SB
(Lj)
60S ribosomal protein L37-Apolymer859588.01UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
72TB
(Lk)
60S ribosomal protein L38polymer778714.41UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Large ribosomal subunit protein eL38
73UB
(Ll)
60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
74VB
(Lm)
Ubiquitin-60S ribosomal protein L40polymer526032.31UniProt (P0CH08)
Pfam (PF01020)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
75WB
(Ln)
60S ribosomal protein L41-Apolymer253354.21Pfam (PF05162)
UniProt (by SIFTS) (P0CX86)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
76XB
(Lo)
60S ribosomal protein L42-Apolymer10311840.21UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
77YB
(Lp)
60S ribosomal protein L43-Apolymer919981.81UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
78ZB
(C1)
25S rRNApolymer31841029020.61Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
79AC
(5)
mRNApolymer113576.31Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
80BC, CC
(7, 6)
tRNApolymer7624410.42GenBank (176427)Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
81DC
(A)
nascent chainpolymer4476.61Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Sequence modifications
LE: 2 - 176 (UniProt: P05739)
PDBExternal DatabaseDetails
Ile 146Leu 146conflict
Met 173Leu 173conflict
LW: 1 - 126 (UniProt: P04449)
PDBExternal DatabaseDetails
Gln 104Asn 104conflict
Gln 109Leu 109conflict
Asp 112Asn 112conflict
Ala 119Glu 119conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains82
Total formula weight3000039.5
All*Total formula weight3000039.5
*Water molecules are not included.

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon