6SWD
IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (2) | 16S ribosomal RNA | polymer | 1044 | 340430.1 | 1 | Pyrococcus abyssi GE5 | ||
| 2 | B (A) | 30S ribosomal protein S3Ae | polymer | 199 | 22888.1 | 1 | UniProt (Q9V2K7) Pfam (PF01015) | Pyrococcus abyssi (strain GE5 / Orsay) | Ribosomal protein S1e |
| 3 | C (B) | 30S ribosomal protein S2 | polymer | 202 | 23026.9 | 1 | UniProt (Q9V191) Pfam (PF00318) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 4 | D (C) | Zn-ribbon RNA-binding protein involved in translation | polymer | 63 | 7163.4 | 1 | UniProt (G8ZFK7) Pfam (PF07754) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 5 | E (D) | 30S ribosomal protein S4 | polymer | 180 | 21381.9 | 1 | UniProt (P61992) Pfam (PF00163) Pfam (PF01479) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 6 | F (E) | 30S ribosomal protein S4e | polymer | 243 | 28246.1 | 1 | UniProt (Q9V1U8) Pfam (PF00900) Pfam (PF08071) Pfam (PF01479) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 7 | G (F) | 30S ribosomal protein S5 | polymer | 236 | 26523.9 | 1 | UniProt (Q9V1V5) Pfam (PF00333) Pfam (PF03719) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 8 | H (G) | 30S ribosomal protein S6e | polymer | 125 | 14029.5 | 1 | UniProt (Q9UYS3) Pfam (PF01092) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 9 | I (I) | 30S ribosomal protein S8 | polymer | 130 | 14772.2 | 1 | UniProt (Q9V1V0) Pfam (PF00410) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 10 | J (J) | 30S ribosomal protein S8e | polymer | 127 | 14293.7 | 1 | UniProt (Q9UZL4) Pfam (PF01201) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 11 | K (M) | 30S ribosomal protein S11 | polymer | 137 | 14773.0 | 1 | UniProt (P62010) Pfam (PF00411) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 12 | L (N) | 30S ribosomal protein S12 | polymer | 147 | 16477.6 | 1 | UniProt (P61994) Pfam (PF00164) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 13 | M (Q) | 30S ribosomal protein S15 | polymer | 158 | 18697.1 | 1 | UniProt (Q9V2K9) Pfam (PF08069) Pfam (PF00312) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 14 | N (R) | 30S ribosomal protein S17 | polymer | 113 | 13364.6 | 1 | UniProt (Q9V1U5) Pfam (PF00366) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 15 | O (V) | 30S ribosomal protein S24e | polymer | 99 | 11798.6 | 1 | UniProt (Q9UY20) Pfam (PF01282) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 16 | P (W) | 30S ribosomal protein S27e | polymer | 65 | 7186.6 | 1 | UniProt (Q9UXZ3) Pfam (PF01667) | Pyrococcus abyssi (strain GE5 / Orsay) | |
| 17 | Q (0) | 30S ribosomal protein aL41 | polymer | 36 | 4910.2 | 1 | UniProt (by SIFTS) (Q8U232) | Pyrococcus abyssi GE5 | |
| 18 | R (5) | mRNA | polymer | 20 | 6448.9 | 1 | Pyrococcus abyssi GE5 | ||
| 19 | S (6) | Translation initiation factor 1A | polymer | 113 | 13078.3 | 1 | UniProt (Q9V138) Pfam (PF01176) | Pyrococcus abyssi (strain GE5 / Orsay) | aIF-1A |
| 20 | AA, BA, CA, DA, EA... (2, 5) | MAGNESIUM ION | non-polymer | 24.3 | 25 | Chemie (MG) | |||
| 21 | RA, SA, TA, UA, VA (C, F, R, W) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 22 | XA, YA, ZA (2, F, Q) | water | water | 18.0 | 26 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 19 |
| Total formula weight | 619490.8 | |
| Non-Polymers* | Number of molecules | 30 |
| Total formula weight | 934.7 | |
| All* | Total formula weight | 620425.4 |
