6SWD
IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Functional Information from GO Data
Chain | GOid | namespace | contents |
0 | 0005840 | cellular_component | ribosome |
0 | 1990904 | cellular_component | ribonucleoprotein complex |
6 | 0003723 | molecular_function | RNA binding |
6 | 0003743 | molecular_function | translation initiation factor activity |
6 | 0005737 | cellular_component | cytoplasm |
6 | 0006412 | biological_process | translation |
6 | 0006413 | biological_process | translational initiation |
A | 0003735 | molecular_function | structural constituent of ribosome |
A | 0005829 | cellular_component | cytosol |
A | 0005840 | cellular_component | ribosome |
A | 0006412 | biological_process | translation |
A | 1990904 | cellular_component | ribonucleoprotein complex |
B | 0000028 | biological_process | ribosomal small subunit assembly |
B | 0003735 | molecular_function | structural constituent of ribosome |
B | 0005840 | cellular_component | ribosome |
B | 0006412 | biological_process | translation |
B | 0015935 | cellular_component | small ribosomal subunit |
B | 0022627 | cellular_component | cytosolic small ribosomal subunit |
B | 1990904 | cellular_component | ribonucleoprotein complex |
D | 0003723 | molecular_function | RNA binding |
D | 0003735 | molecular_function | structural constituent of ribosome |
D | 0005840 | cellular_component | ribosome |
D | 0006412 | biological_process | translation |
D | 0015935 | cellular_component | small ribosomal subunit |
D | 0019843 | molecular_function | rRNA binding |
D | 0042274 | biological_process | ribosomal small subunit biogenesis |
D | 0043226 | cellular_component | organelle |
D | 1990904 | cellular_component | ribonucleoprotein complex |
E | 0003723 | molecular_function | RNA binding |
E | 0003735 | molecular_function | structural constituent of ribosome |
E | 0005840 | cellular_component | ribosome |
E | 0006412 | biological_process | translation |
E | 0019843 | molecular_function | rRNA binding |
E | 0022627 | cellular_component | cytosolic small ribosomal subunit |
E | 1990904 | cellular_component | ribonucleoprotein complex |
F | 0003723 | molecular_function | RNA binding |
F | 0003735 | molecular_function | structural constituent of ribosome |
F | 0005737 | cellular_component | cytoplasm |
F | 0005840 | cellular_component | ribosome |
F | 0006412 | biological_process | translation |
F | 0015935 | cellular_component | small ribosomal subunit |
F | 0019843 | molecular_function | rRNA binding |
F | 1990904 | cellular_component | ribonucleoprotein complex |
G | 0003735 | molecular_function | structural constituent of ribosome |
G | 0005840 | cellular_component | ribosome |
G | 0006412 | biological_process | translation |
G | 1990904 | cellular_component | ribonucleoprotein complex |
I | 0003735 | molecular_function | structural constituent of ribosome |
I | 0005840 | cellular_component | ribosome |
I | 0006412 | biological_process | translation |
I | 0019843 | molecular_function | rRNA binding |
I | 0022627 | cellular_component | cytosolic small ribosomal subunit |
I | 1990904 | cellular_component | ribonucleoprotein complex |
J | 0000462 | biological_process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
J | 0003735 | molecular_function | structural constituent of ribosome |
J | 0005840 | cellular_component | ribosome |
J | 0006412 | biological_process | translation |
J | 0022627 | cellular_component | cytosolic small ribosomal subunit |
J | 1990904 | cellular_component | ribonucleoprotein complex |
M | 0003735 | molecular_function | structural constituent of ribosome |
M | 0005840 | cellular_component | ribosome |
M | 0006412 | biological_process | translation |
M | 0019843 | molecular_function | rRNA binding |
M | 0022627 | cellular_component | cytosolic small ribosomal subunit |
M | 1990904 | cellular_component | ribonucleoprotein complex |
N | 0003735 | molecular_function | structural constituent of ribosome |
N | 0005840 | cellular_component | ribosome |
N | 0006412 | biological_process | translation |
N | 0015935 | cellular_component | small ribosomal subunit |
N | 0019843 | molecular_function | rRNA binding |
N | 0022627 | cellular_component | cytosolic small ribosomal subunit |
N | 1990904 | cellular_component | ribonucleoprotein complex |
Q | 0003735 | molecular_function | structural constituent of ribosome |
Q | 0005840 | cellular_component | ribosome |
Q | 0006412 | biological_process | translation |
Q | 0022627 | cellular_component | cytosolic small ribosomal subunit |
Q | 0070181 | molecular_function | small ribosomal subunit rRNA binding |
Q | 1990904 | cellular_component | ribonucleoprotein complex |
R | 0003735 | molecular_function | structural constituent of ribosome |
R | 0005840 | cellular_component | ribosome |
R | 0006412 | biological_process | translation |
R | 0019843 | molecular_function | rRNA binding |
R | 0022627 | cellular_component | cytosolic small ribosomal subunit |
R | 1990904 | cellular_component | ribonucleoprotein complex |
V | 0003735 | molecular_function | structural constituent of ribosome |
V | 0005840 | cellular_component | ribosome |
V | 0006412 | biological_process | translation |
V | 1990904 | cellular_component | ribonucleoprotein complex |
W | 0000028 | biological_process | ribosomal small subunit assembly |
W | 0003723 | molecular_function | RNA binding |
W | 0003735 | molecular_function | structural constituent of ribosome |
W | 0005840 | cellular_component | ribosome |
W | 0006412 | biological_process | translation |
W | 0008270 | molecular_function | zinc ion binding |
W | 0022627 | cellular_component | cytosolic small ribosomal subunit |
W | 0046872 | molecular_function | metal ion binding |
W | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1601 |
Chain | Residue |
2 | G28 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1602 |
Chain | Residue |
2 | A539 |
2 | A540 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1603 |
Chain | Residue |
2 | C39 |
site_id | AC4 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1604 |
Chain | Residue |
2 | A1370 |
site_id | AC5 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1605 |
Chain | Residue |
2 | A574 |
site_id | AC6 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1606 |
Chain | Residue |
2 | A587 |
site_id | AC7 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1607 |
Chain | Residue |
2 | G591 |
site_id | AC8 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1608 |
Chain | Residue |
2 | G727 |
2 | A726 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1609 |
Chain | Residue |
2 | 6MZ1469 |
2 | G1474 |
2 | A1476 |
2 | G1477 |
site_id | AD1 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1610 |
Chain | Residue |
2 | C106 |
site_id | AD2 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1611 |
Chain | Residue |
2 | A148 |
site_id | AD3 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1612 |
Chain | Residue |
2 | C584 |
2 | C586 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue MG 2 1616 |
Chain | Residue |
2 | A1468 |
2 | 6MZ1469 |
2 | G1474 |
site_id | AD5 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1619 |
Chain | Residue |
2 | A474 |
2 | A475 |
site_id | AD6 |
Number of Residues | 1 |
Details | binding site for residue MG 2 1620 |
Chain | Residue |
2 | C1373 |
site_id | AD7 |
Number of Residues | 2 |
Details | binding site for residue MG 2 1621 |
Chain | Residue |
2 | G554 |
2 | G555 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue MG 2 1622 |
Chain | Residue |
2 | A112 |
2 | G113 |
2 | U114 |
2 | C298 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue ZN C 101 |
Chain | Residue |
C | CYS32 |
C | CYS35 |
C | CYS55 |
C | CYS58 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue ZN C 102 |
Chain | Residue |
C | CYS14 |
C | CYS17 |
C | CYS43 |
C | CYS46 |
site_id | AE2 |
Number of Residues | 4 |
Details | binding site for residue ZN F 301 |
Chain | Residue |
F | CYS128 |
F | CYS133 |
F | CYS135 |
F | HIS139 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue ZN R 201 |
Chain | Residue |
R | CYS16 |
R | CYS21 |
R | HIS24 |
R | CYS77 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue ZN W 101 |
Chain | Residue |
W | CYS20 |
W | CYS23 |
W | CYS39 |
W | CYS42 |
site_id | AE5 |
Number of Residues | 2 |
Details | binding site for residue MG 5 901 |
Chain | Residue |
5 | U816 |
5 | A817 |
site_id | AE6 |
Number of Residues | 10 |
Details | binding site for residues MA6 2 1487 and MA6 2 1488 |
Chain | Residue |
0 | ARG22 |
2 | G758 |
2 | 5HM1378 |
2 | G1379 |
2 | U1380 |
2 | G1466 |
2 | UR31467 |
2 | G1485 |
2 | G1486 |
2 | C1489 |
Functional Information from PROSITE/UniProt
site_id | PS00053 |
Number of Residues | 18 |
Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GilIVSTSqGVMshkeAR |
Chain | Residue | Details |
I | GLY100-ARG117 |
site_id | PS00054 |
Number of Residues | 23 |
Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALarA.GLkIgrveDvTPiPHD |
Chain | Residue | Details |
M | ILE102-ASP124 |
site_id | PS00056 |
Number of Residues | 13 |
Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDrVlIaEtRPLS |
Chain | Residue | Details |
R | GLY83-SER95 |
site_id | PS00362 |
Number of Residues | 31 |
Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. LrkHLeqhPkDlhSmrgLqlIeskirrLvkY |
Chain | Residue | Details |
Q | LEU105-TYR135 |
site_id | PS00528 |
Number of Residues | 15 |
Details | RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLAaPtsWyIeR |
Chain | Residue | Details |
E | HIS9-ARG23 |
site_id | PS00529 |
Number of Residues | 23 |
Details | RIBOSOMAL_S24E Ribosomal protein S24e signature. FGsyKSkGYAkYYYDkdrmlyiE |
Chain | Residue | Details |
V | PHE60-GLU82 |
site_id | PS00578 |
Number of Residues | 12 |
Details | RIBOSOMAL_S6E Ribosomal protein S6e signature. IRGGtDkdGfPM |
Chain | Residue | Details |
G | ILE63-MET74 |
site_id | PS00585 |
Number of Residues | 33 |
Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrvrFrVlaAVGNrd.GyVGlGighgr.EVgi.AI |
Chain | Residue | Details |
F | GLY78-ILE110 |
site_id | PS00632 |
Number of Residues | 25 |
Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtiVYKkglArTmrqARqLI |
Chain | Residue | Details |
D | LEU101-ILE125 |
site_id | PS00962 |
Number of Residues | 12 |
Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. LdQYLAAGVHIG |
Chain | Residue | Details |
B | LEU9-GLY20 |
site_id | PS00963 |
Number of Residues | 25 |
Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdvIIItDpraDhqaMkEaieiGIP |
Chain | Residue | Details |
B | PRO112-PRO136 |
site_id | PS01168 |
Number of Residues | 33 |
Details | RIBOSOMAL_S27E Ribosomal protein S27e signature. KCidCgneqivFShPatrvrCnvCGatLvePtG |
Chain | Residue | Details |
W | LYS19-GLY51 |
site_id | PS01191 |
Number of Residues | 13 |
Details | RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. VlNRVvEvTLkDI |
Chain | Residue | Details |
A | VAL44-ILE56 |
site_id | PS01193 |
Number of Residues | 20 |
Details | RIBOSOMAL_S8E Ribosomal protein S8e signature. RkpSGGrivla.RkKrKrELG |
Chain | Residue | Details |
J | ARG10-GLY29 |
site_id | PS01262 |
Number of Residues | 23 |
Details | IF1A Eukaryotic initiation factor 1A signature. AlGaGWmdvrCeDGkiRrcRIpG |
Chain | Residue | Details |
6 | ALA31-GLY53 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 22 |
Details | ZN_FING: C4-type => ECO:0000255 |
Chain | Residue | Details |
W | CYS20-CYS42 |