6SLI
Structure of the RagAB peptide transporter
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G, J (A, C, F, I) | Lipoprotein RagB | polymer | 488 | 55259.7 | 4 | UniProt (F5H948) Pfam (PF14322) Pfam (PF07980) | Porphyromonas gingivalis (strain ATCC BAA-308 / W83) | |
| 2 | B, E, H, K (B, D, G, J) | RagA protein | polymer | 997 | 110162.2 | 4 | UniProt (Q7MXJ7) Pfam (PF13715) Pfam (PF07715) Pfam (PF00593) | Porphyromonas gingivalis (strain ATCC BAA-308 / W83) | |
| 3 | C, I (P, H) | ALA-SER-THR-THR-GLY-GLY-ASN-SER-GLN-ARG-GLY-SER-GLY | polymer | 13 | 1180.2 | 2 | Porphyromonas gingivalis W83 | ||
| 4 | F, L (E, K) | ASTTGGNSQRGGG | polymer | 13 | 1150.1 | 2 | Porphyromonas gingivalis W83 | ||
| 5 | M (B) | (1R,4S,6R)-6-({[2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL]OXY}METHYL)-4-HYDROXY-1-{[(15-METHYLHEXADECANOYL)OXY]METHYL}-4-OXIDO-7-OXO-3,5-DIOXA-8-AZA-4-PHOSPHAHEPTACOS-1-YL 15-METHYLHEXADECANOATE | non-polymer | 1233.7 | 1 | Chemie (5PL) | |||
| 6 | N, O (B) | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE | non-polymer | 306.4 | 2 | Chemie (C8E) |
Sequence modifications
A, C, F, I: 20 - 501 (UniProt: F5H948)
| PDB | External Database | Details |
|---|---|---|
| His 502 | - | expression tag |
| His 503 | - | expression tag |
| His 504 | - | expression tag |
| His 505 | - | expression tag |
| His 506 | - | expression tag |
| His 507 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 666348.3 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 1846.6 | |
| All* | Total formula weight | 668194.9 |
