Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6SGB

mt-SSU assemblosome of Trypanosoma brucei

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	CE	uS5m	polymer	435	50147.4	1		Trypanosoma brucei brucei
2	CF	bS6m	polymer	160	18861.5	1	UniProt (Q38BW5) In PDB	Trypanosoma brucei brucei
3	CH	uS8m	polymer	282	32766.5	1		Trypanosoma brucei brucei
4	CK	uS11m	polymer	326	37954.0	1	UniProt (Q389T7) In PDB	Trypanosoma brucei brucei
5	CO	uS15m	polymer	429	50401.2	1	UniProt (Q4GZ99) In PDB	Trypanosoma brucei brucei
6	CP	bS16m	polymer	188	22077.8	1	UniProt (Q384N9) In PDB	Trypanosoma brucei brucei
7	CQ	uS17m	polymer	336	39012.4	1		Trypanosoma brucei brucei
8	CR	bS18m	polymer	320	36988.7	1		Trypanosoma brucei brucei
9	Ca	mS22	polymer	602	73064.1	1	UniProt (Q38DR3) In PDB	Trypanosoma brucei brucei
10	Cb	mS23	polymer	311	35358.8	1		Trypanosoma brucei brucei
11	Cd	mS26	polymer	440	51136.7	1	UniProt (Q38DK6) In PDB	Trypanosoma brucei brucei
12	Cj	mS34	polymer	257	28728.2	1	UniProt (Q57UK0) In PDB	Trypanosoma brucei brucei
13	Cn	mS38	polymer	250	28240.6	1	UniProt (Q57VQ9) In PDB	Trypanosoma brucei brucei
14	Cp	mS41	polymer	187	22421.5	1	UniProt (Q389L3) In PDB	Trypanosoma brucei brucei
15	DD	mS51 (KRIPP1)	polymer	812	95081.0	1		Trypanosoma brucei brucei
16	DI	mS56	polymer	407	47306.8	1		Trypanosoma brucei brucei
17	DL	mS59	polymer	307	35395.7	1		Trypanosoma brucei brucei
18	DO	mS62 (KRIPP14)	polymer	282	32068.1	1	UniProt (Q383D1) In PDB	Trypanosoma brucei brucei
19	DP	mS63 (KRIPP16)	polymer	274	31922.2	1		Trypanosoma brucei brucei
20	DR	mS65	polymer	270	30617.4	1		Trypanosoma brucei brucei
21	DU	mS68	polymer	228	26472.8	1		Trypanosoma brucei brucei
22	DZ	mS73	polymer	94	11360.9	1	UniProt (Q587C4) In PDB	Trypanosoma brucei brucei
23	F2	mt-SAF2 (KRIPP2)	polymer	1024	116189.5	1		Trypanosoma brucei brucei
24	F3	mt-SAF3	polymer	966	106621.7	1	UniProt (Q38E61) In PDB	Trypanosoma brucei brucei
25	F5	mt-SAF5	polymer	754	86949.4	1		Trypanosoma brucei brucei
26	F6	mt-SAF6	polymer	676	76781.4	1	UniProt (Q38FQ8) Pfam (PF14687) In PDB	Trypanosoma brucei brucei
27	F7	mt-SAF7 (KRIPP10)	polymer	679	76675.2	1	UniProt (Q57UW6) In PDB	Trypanosoma brucei brucei
28	F8	mt-SAF8	polymer	726	76725.2	1		Trypanosoma brucei brucei
29	F9	mt-SAF9	polymer	608	69781.8	1		Trypanosoma brucei brucei
30	FA	mt-SAF10	polymer	642	69306.8	1	UniProt (Q386U1) In PDB	Trypanosoma brucei brucei
31	FB, FC	mt-SAF11	polymer	579	64917.0	2		Trypanosoma brucei brucei
32	FE	mt-SAF13	polymer	553	63690.7	1		Trypanosoma brucei brucei
33	FJ	mt-SAF18	polymer	362	42508.0	1		Trypanosoma brucei brucei
34	FM, FN	mt-SAF21	polymer	370	39610.8	2		Trypanosoma brucei brucei
35	FO	mt-SAF22 (KRIPP17)	polymer	334	39132.6	1	UniProt (Q389F9) In PDB	Trypanosoma brucei brucei
36	FP	mt-SAF23	polymer	349	38240.2	1		Trypanosoma brucei brucei
37	FQ, FR, FS, FT, FU	mt-SAF24	polymer	307	34648.0	5	UniProt (Q387P8) Pfam (PF02214) In PDB	Trypanosoma brucei brucei
38	FW	mt-SAF26	polymer	263	30538.6	1	UniProt (Q38FI3) Pfam (PF01451) In PDB	Trypanosoma brucei brucei
39	FX	mt-SAF27 (KRIPP11)	polymer	239	26936.7	1	UniProt (Q57YK5) Pfam (PF13812) In PDB	Trypanosoma brucei brucei
40	FY	mt-SAF28	polymer	188	21468.7	1		Trypanosoma brucei brucei
41	FZ	mt-SAF29	polymer	178	20048.5	1		Trypanosoma brucei brucei
42	Fa	mt-SAF30	polymer	171	19659.8	1	UniProt (Q57VU7) In PDB	Trypanosoma brucei brucei
43	Fb	mt-SAF31	polymer	151	17673.5	1	UniProt (Q581U4) In PDB	Trypanosoma brucei brucei
44	Fc	mt-SAF32	polymer	148	16550.8	1	UniProt (Q57WW9) Pfam (PF00550) In PDB	Trypanosoma brucei brucei
45	Fd	mt-SAF33	polymer	143	16291.1	1	UniProt (Q581T4) Pfam (PF14311) In PDB	Trypanosoma brucei brucei
46	UA	UNK-A	polymer	21	1805.2	1		Trypanosoma brucei brucei
47	UB, Uk	UNK-B, UNK-k	polymer	27	2315.8	2		Trypanosoma brucei brucei
48	UC	UNK-C	polymer	10	869.1	1		Trypanosoma brucei brucei
49	UD, UM, UQ, Uf	UNK-D, UNK-M, UNK-Q, UNK-f	polymer	9	784.0	4		Trypanosoma brucei brucei
50	UE, UP	UNK-E, UNK-P	polymer	45	3847.7	2		Trypanosoma brucei brucei
51	UF, Um	UNK-F, UNK-m	polymer	11	954.2	2		Trypanosoma brucei brucei
52	UG	UNK-G	polymer	17	1464.8	1		Trypanosoma brucei brucei
53	UH	UNK-H	polymer	5	443.5	1		Trypanosoma brucei brucei
54	UI, UN	UNK-I, UNK-N	polymer	8	698.9	2		Trypanosoma brucei brucei
55	UJ	UNK-J	polymer	16	1379.7	1		Trypanosoma brucei brucei
56	UK	UNK-K	polymer	24	2060.5	1		Trypanosoma brucei brucei
57	UL	UNK-L	polymer	22	1890.3	1		Trypanosoma brucei brucei
58	UO	UNK-O	polymer	30	2571.2	1		Trypanosoma brucei brucei
59	UY	UNK-Y	polymer	468	39847.1	1		Trypanosoma brucei brucei
60	CA	9S rRNA	polymer	620	198215.2	1		Trypanosoma brucei brucei
61	CC	mS3m	polymer	74	9070.9	1		Trypanosoma brucei brucei
62	CI	uS9m	polymer	443	50201.0	1	UniProt (Q57W62) Pfam (PF00380) In PDB	Trypanosoma brucei brucei
63	CJ	uS10m	polymer	817	94321.1	1		Trypanosoma brucei brucei
64	CN	uS14m	polymer	166	19900.0	1	UniProt (Q580I0) In PDB	Trypanosoma brucei brucei
65	CS	uS19m	polymer	244	28364.6	1		Trypanosoma brucei brucei
66	Cg	mS29	polymer	498	57048.8	1	UniProt (Q585C2) Pfam (PF10236) In PDB	Trypanosoma brucei brucei
67	Ci	mS33	polymer	181	21244.1	1	UniProt (Q57WW0) In PDB	Trypanosoma brucei brucei
68	Ck	mS35	polymer	874	98377.8	1	UniProt (Q387C7) In PDB	Trypanosoma brucei brucei
69	DB	mS49	polymer	1181	137234.1	1		Trypanosoma brucei brucei
70	DC	mS50	polymer	1165	131719.3	1		Trypanosoma brucei brucei
71	DE	mS52	polymer	747	84998.2	1	UniProt (Q386Q7) In PDB	Trypanosoma brucei brucei
72	DF	mS53	polymer	666	75310.9	1		Trypanosoma brucei brucei
73	DG	mS54	polymer	631	72046.0	1		Trypanosoma brucei brucei
74	DH	mS55 (KRIPP8)	polymer	581	66676.7	1		Trypanosoma brucei brucei
75	DJ	mS57	polymer	396	45956.3	1	UniProt (Q584U8) In PDB	Trypanosoma brucei brucei
76	DK	mS58	polymer	324	35623.9	1		Trypanosoma brucei brucei
77	DT	mS67	polymer	247	30096.1	1	UniProt (Q586G5) Pfam (PF00581) In PDB	Trypanosoma brucei brucei
78	DV	mS69	polymer	183	21589.7	1	UniProt (Q57UZ6) In PDB	Trypanosoma brucei brucei
79	DW	mS70	polymer	179	21247.4	1		Trypanosoma brucei brucei
80	DX	mS71	polymer	169	20093.2	1	UniProt (Q383G5) In PDB	Trypanosoma brucei brucei
81	DY	mS72	polymer	163	19340.4	1	UniProt (Q57YD4) In PDB	Trypanosoma brucei brucei
82	F1	mt-SAF1 (RSM22)	polymer	1041	119799.4	1	UniProt (Q385R2) Pfam (PF09243) In PDB	Trypanosoma brucei brucei
83	F4	mt-SAF4	polymer	811	91549.3	1		Trypanosoma brucei brucei
84	FD	mt-SAF12 (KRIPP18)	polymer	579	65049.2	1	UniProt (Q583U2) In PDB	Trypanosoma brucei brucei
85	FF	mt-SAF14	polymer	474	53320.8	1	UniProt (Q57W60) Pfam (PF01795) In PDB	Trypanosoma brucei brucei
86	FG	mt-SAF15	polymer	463	53273.9	1		Trypanosoma brucei brucei
87	FH	mt-SAF16	polymer	457	50911.4	1		Trypanosoma brucei brucei
88	FI	mt-SAF17	polymer	445	50147.6	1		Trypanosoma brucei brucei
89	FK	mt-SAF19	polymer	372	41236.4	1	UniProt (Q57XS8) Pfam (PF02330) In PDB	Trypanosoma brucei brucei
90	FL	mt-SAF20	polymer	353	40293.9	1		Trypanosoma brucei brucei
91	FV	mt-SAF25	polymer	264	29470.5	1	UniProt (Q38C60) In PDB	Trypanosoma brucei brucei
92	Fe	mt-SAF34	polymer	123	14862.9	1	UniProt (Q387L0) In PDB	Trypanosoma brucei brucei
93	Ua	UNK-a	polymer	47	4017.9	1		Trypanosoma brucei brucei
94	Ub	UNK-b	polymer	42	3592.4	1		Trypanosoma brucei brucei
95	Uc	UNK-c	polymer	12	1039.3	1		Trypanosoma brucei brucei
96	Ud	UNK-d	polymer	59	5039.2	1		Trypanosoma brucei brucei
97	Ue	UNK-e	polymer	29	2486.1	1		Trypanosoma brucei brucei
98	Ug	UNK-g	polymer	167	14230.5	1		Trypanosoma brucei brucei
99	Uh	UNK-h	polymer	255	21719.7	1		Trypanosoma brucei brucei
100	Ui	UNK-i	polymer	32	2741.4	1		Trypanosoma brucei brucei
101	Uj	UNK-j	polymer	19	1635.0	1		Trypanosoma brucei brucei
102	Ul	UNK-l	polymer	14	1209.5	1		Trypanosoma brucei brucei
103	Ux	UNK-x	polymer	110	9379.6	1		Trypanosoma brucei brucei
104	FP, FW, CA, Cg	MAGNESIUM ION	non-polymer		24.3	5	Chemie (MG)
105	FW	PHOSPHATE ION	non-polymer		95.0	1	Chemie (PO4)
106	Fc	S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE	non-polymer		496.6	1	Chemie (PM8)
107	FL, Fe, Fd, F1, FG	ZINC ION	non-polymer		65.4	6	Chemie (ZN)
108	Cg	GUANOSINE-5'-TRIPHOSPHATE	non-polymer		523.2	1	Chemie (GTP)
109	F1, FF	S-ADENOSYL-L-HOMOCYSTEINE	non-polymer		384.4	2	Chemie (SAH)
110		water	water		18.0	3	Chemie (HOH)

Sequence modifications

CK: 1 - 326 (UniProt: Q389T7)

PDB	External Database	Details
Arg 3	Gln 3	conflict

F3: 1 - 966 (UniProt: Q38E61)

PDB	External Database	Details
Thr 44	Ala 44	conflict
Val 190	Ile 190	conflict
Ala 303	Ser 303	conflict
Asp 418	Asn 418	conflict

F6: 1 - 676 (UniProt: Q38FQ8)

PDB	External Database	Details
Arg 285	His 285	conflict
Ile 291	Thr 291	conflict
Ala 602	Val 602	conflict
Cys 676	Phe 676	conflict

F7: 1 - 679 (UniProt: Q57UW6)

PDB	External Database	Details
Ile 36	Thr 36	conflict
Glu 470	Lys 470	conflict
Val 474	Ala 474	conflict

FA: 1 - 642 (UniProt: Q386U1)

PDB	External Database	Details
Ala 173	Thr 173	conflict
Tyr 352	His 352	conflict

Fa: 1 - 171 (UniProt: Q57VU7)

PDB	External Database	Details
Ala 73	Val 73	conflict

CI: 1 - 443 (UniProt: Q57W62)

PDB	External Database	Details
Ala 370	Val 370	conflict

Cg: 1 - 498 (UniProt: Q585C2)

PDB	External Database	Details
Val 181	Ala 181	conflict
Arg 498	Met 498	conflict

Ck: 1 - 874 (UniProt: Q387C7)

PDB	External Database	Details
Ser 107	Leu 107	conflict
Phe 144	Leu 144	conflict
Tyr 253	Phe 253	conflict
Glu 339	Val 339	conflict
Gly 871	Glu 871	conflict

DV: 1 - 183 (UniProt: Q57UZ6)

PDB	External Database	Details
Ala 163	Thr 163	conflict

DY: 1 - 163 (UniProt: Q57YD4)

PDB	External Database	Details
His 34	Asp 34	conflict

F1: 1 - 1041 (UniProt: Q385R2)

PDB	External Database	Details
Ser 707	Gly 707	conflict
Thr 973	Met 973	conflict

FF: 1 - 474 (UniProt: Q57W60)

PDB	External Database	Details
Ala 70	Pro 70	conflict
Phe 179	Leu 179	conflict

FK: 1 - 372 (UniProt: Q57XS8)

PDB	External Database	Details
His 38	Arg 38	conflict

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	116
Polymers	Total formula weight	4338232.1
Non-Polymers*	Number of molecules	16
Non-Polymers*	Total formula weight	2397.6
All*	Total formula weight	4340629.7

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)