Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6SGB

mt-SSU assemblosome of Trypanosoma brucei

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (CE)	uS5m	polymer	435	50147.4	1		Trypanosoma brucei brucei
2	B (CF)	bS6m	polymer	160	18861.5	1	UniProt (Q38BW5)	Trypanosoma brucei brucei
3	C (CH)	uS8m	polymer	282	32766.5	1		Trypanosoma brucei brucei
4	D (CK)	uS11m	polymer	326	37954.0	1	UniProt (Q389T7)	Trypanosoma brucei brucei
5	E (CO)	uS15m	polymer	429	50401.2	1	UniProt (Q4GZ99)	Trypanosoma brucei brucei
6	F (CP)	bS16m	polymer	188	22077.8	1	UniProt (Q384N9)	Trypanosoma brucei brucei
7	G (CQ)	uS17m	polymer	336	39012.4	1		Trypanosoma brucei brucei
8	H (CR)	bS18m	polymer	320	36988.7	1		Trypanosoma brucei brucei
9	I (Ca)	mS22	polymer	602	73064.1	1	UniProt (Q38DR3)	Trypanosoma brucei brucei
10	J (Cb)	mS23	polymer	311	35358.8	1		Trypanosoma brucei brucei
11	K (Cd)	mS26	polymer	440	51136.7	1	UniProt (Q38DK6)	Trypanosoma brucei brucei
12	L (Cj)	mS34	polymer	257	28728.2	1	UniProt (Q57UK0)	Trypanosoma brucei brucei
13	M (Cn)	mS38	polymer	250	28240.6	1	UniProt (Q57VQ9)	Trypanosoma brucei brucei
14	N (Cp)	mS41	polymer	187	22421.5	1	UniProt (Q389L3) Pfam (PF09597)	Trypanosoma brucei brucei
15	O (DD)	mS51 (KRIPP1)	polymer	812	95081.0	1		Trypanosoma brucei brucei
16	P (DI)	mS56	polymer	407	47306.8	1		Trypanosoma brucei brucei
17	Q (DL)	mS59	polymer	307	35395.7	1		Trypanosoma brucei brucei
18	R (DO)	mS62 (KRIPP14)	polymer	282	32068.1	1	UniProt (Q383D1)	Trypanosoma brucei brucei
19	S (DP)	mS63 (KRIPP16)	polymer	274	31922.2	1		Trypanosoma brucei brucei
20	T (DR)	mS65	polymer	270	30617.4	1		Trypanosoma brucei brucei
21	U (DU)	mS68	polymer	228	26472.8	1		Trypanosoma brucei brucei
22	V (DZ)	mS73	polymer	94	11360.9	1	UniProt (Q587C4)	Trypanosoma brucei brucei
23	W (F2)	mt-SAF2 (KRIPP2)	polymer	1024	116189.5	1		Trypanosoma brucei brucei
24	X (F3)	mt-SAF3	polymer	966	106621.7	1	UniProt (Q38E61)	Trypanosoma brucei brucei
25	Y (F5)	mt-SAF5	polymer	754	86949.4	1		Trypanosoma brucei brucei
26	Z (F6)	mt-SAF6	polymer	676	76781.4	1	UniProt (Q38FQ8) Pfam (PF14687)	Trypanosoma brucei brucei
27	AA (F7)	mt-SAF7 (KRIPP10)	polymer	679	76675.2	1	UniProt (Q57UW6)	Trypanosoma brucei brucei
28	BA (F8)	mt-SAF8	polymer	726	76725.2	1		Trypanosoma brucei brucei
29	CA (F9)	mt-SAF9	polymer	608	69781.8	1		Trypanosoma brucei brucei
30	DA (FA)	mt-SAF10	polymer	642	69306.8	1	UniProt (Q386U1)	Trypanosoma brucei brucei
31	EA, FA (FB, FC)	mt-SAF11	polymer	579	64917.0	2		Trypanosoma brucei brucei
32	GA (FE)	mt-SAF13	polymer	553	63690.7	1		Trypanosoma brucei brucei
33	HA (FJ)	mt-SAF18	polymer	362	42508.0	1		Trypanosoma brucei brucei
34	IA, JA (FM, FN)	mt-SAF21	polymer	370	39610.8	2		Trypanosoma brucei brucei
35	KA (FO)	mt-SAF22 (KRIPP17)	polymer	334	39132.6	1	UniProt (Q389F9)	Trypanosoma brucei brucei
36	LA (FP)	mt-SAF23	polymer	349	38240.2	1		Trypanosoma brucei brucei
37	MA, NA, OA, PA, QA (FQ, FR, FS, FT, FU)	mt-SAF24	polymer	307	34648.0	5	UniProt (Q387P8) Pfam (PF02214)	Trypanosoma brucei brucei
38	RA (FW)	mt-SAF26	polymer	263	30538.6	1	UniProt (Q38FI3) Pfam (PF01451)	Trypanosoma brucei brucei
39	SA (FX)	mt-SAF27 (KRIPP11)	polymer	239	26936.7	1	UniProt (Q57YK5) Pfam (PF13812)	Trypanosoma brucei brucei
40	TA (FY)	mt-SAF28	polymer	188	21468.7	1		Trypanosoma brucei brucei
41	UA (FZ)	mt-SAF29	polymer	178	20048.5	1		Trypanosoma brucei brucei
42	VA (Fa)	mt-SAF30	polymer	171	19659.8	1	UniProt (Q57VU7)	Trypanosoma brucei brucei
43	WA (Fb)	mt-SAF31	polymer	151	17673.5	1	UniProt (Q581U4)	Trypanosoma brucei brucei
44	XA (Fc)	mt-SAF32	polymer	148	16550.8	1	UniProt (Q57WW9) Pfam (PF00550)	Trypanosoma brucei brucei
45	YA (Fd)	mt-SAF33	polymer	143	16291.1	1	UniProt (Q581T4) Pfam (PF14311)	Trypanosoma brucei brucei
46	ZA (UA)	UNK-A	polymer	21	1805.2	1		Trypanosoma brucei brucei
47	AB, ID (UB, Uk)	UNK-B, UNK-k	polymer	27	2315.8	2		Trypanosoma brucei brucei
48	BB (UC)	UNK-C	polymer	10	869.1	1		Trypanosoma brucei brucei
49	CB, DD, LB, PB (UD, UM, UQ, Uf)	UNK-D, UNK-M, UNK-Q, UNK-f	polymer	9	784.0	4		Trypanosoma brucei brucei
50	DB, OB (UE, UP)	UNK-E, UNK-P	polymer	45	3847.7	2		Trypanosoma brucei brucei
51	EB, KD (UF, Um)	UNK-F, UNK-m	polymer	11	954.2	2		Trypanosoma brucei brucei
52	FB (UG)	UNK-G	polymer	17	1464.8	1		Trypanosoma brucei brucei
53	GB (UH)	UNK-H	polymer	5	443.5	1		Trypanosoma brucei brucei
54	HB, MB (UI, UN)	UNK-I, UNK-N	polymer	8	698.9	2		Trypanosoma brucei brucei
55	IB (UJ)	UNK-J	polymer	16	1379.7	1		Trypanosoma brucei brucei
56	JB (UK)	UNK-K	polymer	24	2060.5	1		Trypanosoma brucei brucei
57	KB (UL)	UNK-L	polymer	22	1890.3	1		Trypanosoma brucei brucei
58	NB (UO)	UNK-O	polymer	30	2571.2	1		Trypanosoma brucei brucei
59	QB (UY)	UNK-Y	polymer	468	39847.1	1		Trypanosoma brucei brucei
60	RB (CA)	9S rRNA	polymer	620	198215.2	1		Trypanosoma brucei brucei
61	SB (CC)	mS3m	polymer	74	9070.9	1		Trypanosoma brucei brucei
62	TB (CI)	uS9m	polymer	443	50201.0	1	UniProt (Q57W62) Pfam (PF00380)	Trypanosoma brucei brucei
63	UB (CJ)	uS10m	polymer	817	94321.1	1		Trypanosoma brucei brucei
64	VB (CN)	uS14m	polymer	166	19900.0	1	UniProt (Q580I0)	Trypanosoma brucei brucei
65	WB (CS)	uS19m	polymer	244	28364.6	1		Trypanosoma brucei brucei
66	XB (Cg)	mS29	polymer	498	57048.8	1	UniProt (Q585C2) Pfam (PF10236)	Trypanosoma brucei brucei
67	YB (Ci)	mS33	polymer	181	21244.1	1	UniProt (Q57WW0)	Trypanosoma brucei brucei
68	ZB (Ck)	mS35	polymer	874	98377.8	1	UniProt (Q387C7)	Trypanosoma brucei brucei
69	AC (DB)	mS49	polymer	1181	137234.1	1		Trypanosoma brucei brucei
70	BC (DC)	mS50	polymer	1165	131719.3	1		Trypanosoma brucei brucei
71	CC (DE)	mS52	polymer	747	84998.2	1	UniProt (Q386Q7)	Trypanosoma brucei brucei
72	DC (DF)	mS53	polymer	666	75310.9	1		Trypanosoma brucei brucei
73	EC (DG)	mS54	polymer	631	72046.0	1		Trypanosoma brucei brucei
74	FC (DH)	mS55 (KRIPP8)	polymer	581	66676.7	1		Trypanosoma brucei brucei
75	GC (DJ)	mS57	polymer	396	45956.3	1	UniProt (Q584U8)	Trypanosoma brucei brucei
76	HC (DK)	mS58	polymer	324	35623.9	1		Trypanosoma brucei brucei
77	IC (DT)	mS67	polymer	247	30096.1	1	UniProt (Q586G5) Pfam (PF00581)	Trypanosoma brucei brucei
78	JC (DV)	mS69	polymer	183	21589.7	1	UniProt (Q57UZ6)	Trypanosoma brucei brucei
79	KC (DW)	mS70	polymer	179	21247.4	1		Trypanosoma brucei brucei
80	LC (DX)	mS71	polymer	169	20093.2	1	UniProt (Q383G5)	Trypanosoma brucei brucei
81	MC (DY)	mS72	polymer	163	19340.4	1	UniProt (Q57YD4)	Trypanosoma brucei brucei
82	NC (F1)	mt-SAF1 (RSM22)	polymer	1041	119799.4	1	UniProt (Q385R2) Pfam (PF09243)	Trypanosoma brucei brucei
83	OC (F4)	mt-SAF4	polymer	811	91549.3	1		Trypanosoma brucei brucei
84	PC (FD)	mt-SAF12 (KRIPP18)	polymer	579	65049.2	1	UniProt (Q583U2)	Trypanosoma brucei brucei
85	QC (FF)	mt-SAF14	polymer	474	53320.8	1	UniProt (Q57W60) Pfam (PF01795)	Trypanosoma brucei brucei
86	RC (FG)	mt-SAF15	polymer	463	53273.9	1		Trypanosoma brucei brucei
87	SC (FH)	mt-SAF16	polymer	457	50911.4	1		Trypanosoma brucei brucei
88	TC (FI)	mt-SAF17	polymer	445	50147.6	1		Trypanosoma brucei brucei
89	UC (FK)	mt-SAF19	polymer	372	41236.4	1	UniProt (Q57XS8) Pfam (PF02330)	Trypanosoma brucei brucei
90	VC (FL)	mt-SAF20	polymer	353	40293.9	1		Trypanosoma brucei brucei
91	WC (FV)	mt-SAF25	polymer	264	29470.5	1	UniProt (Q38C60)	Trypanosoma brucei brucei
92	XC (Fe)	mt-SAF34	polymer	123	14862.9	1	UniProt (Q387L0)	Trypanosoma brucei brucei
93	YC (Ua)	UNK-a	polymer	47	4017.9	1		Trypanosoma brucei brucei
94	ZC (Ub)	UNK-b	polymer	42	3592.4	1		Trypanosoma brucei brucei
95	AD (Uc)	UNK-c	polymer	12	1039.3	1		Trypanosoma brucei brucei
96	BD (Ud)	UNK-d	polymer	59	5039.2	1		Trypanosoma brucei brucei
97	CD (Ue)	UNK-e	polymer	29	2486.1	1		Trypanosoma brucei brucei
98	ED (Ug)	UNK-g	polymer	167	14230.5	1		Trypanosoma brucei brucei
99	FD (Uh)	UNK-h	polymer	255	21719.7	1		Trypanosoma brucei brucei
100	GD (Ui)	UNK-i	polymer	32	2741.4	1		Trypanosoma brucei brucei
101	HD (Uj)	UNK-j	polymer	19	1635.0	1		Trypanosoma brucei brucei
102	JD (Ul)	UNK-l	polymer	14	1209.5	1		Trypanosoma brucei brucei
103	LD (Ux)	UNK-x	polymer	110	9379.6	1		Trypanosoma brucei brucei
104	MD, OD, RD, SD, UD (FP, FW, CA, Cg)	MAGNESIUM ION	non-polymer		24.3	5	Chemie (MG) PubChem (888)
105	ND (FW)	PHOSPHATE ION	non-polymer		95.0	1	Chemie (PO4) PubChem (1061)
106	PD (Fc)	S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE	non-polymer		496.6	1	Chemie (PM8)
107	AE, BE, QD, VD, YD... (FL, Fe, Fd, F1, FG)	ZINC ION	non-polymer		65.4	6	Chemie (ZN)
108	TD (Cg)	GUANOSINE-5'-TRIPHOSPHATE	non-polymer		523.2	1	Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466)
109	WD, XD (F1, FF)	S-ADENOSYL-L-HOMOCYSTEINE	non-polymer		384.4	2	Chemie (SAH) PubChem (16760024) PubChem (193) PubChem (13792) PubChem (177678424) PubChem (189149) PubChem (439155) PubChem (25210495) PubChem (21125603) PubChem (44361184) PubChem (25203782) PubChem (46936206) PubChem (50989525) PubChem (51380914) PubChem (52224398) PubChem (57544532) PubChem (52224400) PubChem (59046843) PubChem (59170628) PubChem (59576228) PubChem (66805708) PubChem (5284331) PubChem (70689219) PubChem (70702054) PubChem (70832431) PubChem (71170554) PubChem (13231890) PubChem (6419189) PubChem (118374891) PubChem (118560068) PubChem (126969526) PubChem (129105892) PubChem (164157219) PubChem (143518505) PubChem (154578335) PubChem (163054214) PubChem (163335525)
110	CE (Cg)	water	water		18.0	3	Chemie (HOH)

Sequence modifications

CK: 1 - 326 (UniProt: Q389T7)

PDB	External Database	Details
Arg 3	Gln 3	conflict

F3: 1 - 966 (UniProt: Q38E61)

PDB	External Database	Details
Thr 44	Ala 44	conflict
Val 190	Ile 190	conflict
Ala 303	Ser 303	conflict
Asp 418	Asn 418	conflict

F6: 1 - 676 (UniProt: Q38FQ8)

PDB	External Database	Details
Arg 285	His 285	conflict
Ile 291	Thr 291	conflict
Ala 602	Val 602	conflict
Cys 676	Phe 676	conflict

F7: 1 - 679 (UniProt: Q57UW6)

PDB	External Database	Details
Ile 36	Thr 36	conflict
Glu 470	Lys 470	conflict
Val 474	Ala 474	conflict

FA: 1 - 642 (UniProt: Q386U1)

PDB	External Database	Details
Ala 173	Thr 173	conflict
Tyr 352	His 352	conflict

Fa: 1 - 171 (UniProt: Q57VU7)

PDB	External Database	Details
Ala 73	Val 73	conflict

CI: 1 - 443 (UniProt: Q57W62)

PDB	External Database	Details
Ala 370	Val 370	conflict

Cg: 1 - 498 (UniProt: Q585C2)

PDB	External Database	Details
Val 181	Ala 181	conflict
Arg 498	Met 498	conflict

Ck: 1 - 874 (UniProt: Q387C7)

PDB	External Database	Details
Ser 107	Leu 107	conflict
Phe 144	Leu 144	conflict
Tyr 253	Phe 253	conflict
Glu 339	Val 339	conflict
Gly 871	Glu 871	conflict

DV: 1 - 183 (UniProt: Q57UZ6)

PDB	External Database	Details
Ala 163	Thr 163	conflict

DY: 1 - 163 (UniProt: Q57YD4)

PDB	External Database	Details
His 34	Asp 34	conflict

F1: 1 - 1041 (UniProt: Q385R2)

PDB	External Database	Details
Ser 707	Gly 707	conflict
Thr 973	Met 973	conflict

FF: 1 - 474 (UniProt: Q57W60)

PDB	External Database	Details
Ala 70	Pro 70	conflict
Phe 179	Leu 179	conflict

FK: 1 - 372 (UniProt: Q57XS8)

PDB	External Database	Details
His 38	Arg 38	conflict

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	116
Polymers	Total formula weight	4338232.1
Non-Polymers*	Number of molecules	16
Non-Polymers*	Total formula weight	2397.6
All*	Total formula weight	4340629.7

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)