6SGA
Body domain of the mt-SSU assemblosome from Trypanosoma brucei
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | CE | uS5m | polymer | 435 | 50147.4 | 1 | Trypanosoma brucei brucei | ||
2 | CF | bS6m | polymer | 160 | 18861.5 | 1 | UniProt (Q38BW5) In PDB | Trypanosoma brucei brucei | |
3 | CH | uS8m | polymer | 282 | 32766.5 | 1 | Trypanosoma brucei brucei | ||
4 | CK | uS11m | polymer | 326 | 37954.0 | 1 | UniProt (Q389T7) In PDB | Trypanosoma brucei brucei | |
5 | CO | uS15m | polymer | 429 | 50401.2 | 1 | UniProt (Q4GZ99) In PDB | Trypanosoma brucei brucei | |
6 | CP | bS16m | polymer | 188 | 22077.8 | 1 | UniProt (Q384N9) In PDB | Trypanosoma brucei brucei | |
7 | CQ | uS17m | polymer | 336 | 39012.4 | 1 | Trypanosoma brucei brucei | ||
8 | CR | bS18m | polymer | 320 | 36988.7 | 1 | Trypanosoma brucei brucei | ||
9 | Ca | mS22 | polymer | 602 | 73064.1 | 1 | UniProt (Q38DR3) In PDB | Trypanosoma brucei brucei | |
10 | Cb | mS23 | polymer | 311 | 35358.8 | 1 | Trypanosoma brucei brucei | ||
11 | Cd | mS26 | polymer | 440 | 51136.7 | 1 | UniProt (Q38DK6) In PDB | Trypanosoma brucei brucei | |
12 | Cj | mS34 | polymer | 257 | 28728.2 | 1 | UniProt (Q57UK0) In PDB | Trypanosoma brucei brucei | |
13 | Cn | mS38 | polymer | 250 | 28240.6 | 1 | UniProt (Q57VQ9) In PDB | Trypanosoma brucei brucei | |
14 | Cp | mS41 | polymer | 187 | 22421.5 | 1 | UniProt (Q389L3) In PDB | Trypanosoma brucei brucei | |
15 | DD | mS51 (KRIPP1) | polymer | 812 | 95081.0 | 1 | Trypanosoma brucei brucei | ||
16 | DI | mS56 | polymer | 407 | 47306.8 | 1 | Trypanosoma brucei brucei | ||
17 | DL | mS59 | polymer | 307 | 35395.7 | 1 | Trypanosoma brucei brucei | ||
18 | DO | mS62 (KRIPP14) | polymer | 282 | 32068.1 | 1 | UniProt (Q383D1) In PDB | Trypanosoma brucei brucei | |
19 | DP | mS63 (KRIPP16) | polymer | 274 | 31922.2 | 1 | Trypanosoma brucei brucei | ||
20 | DR | mS65 | polymer | 270 | 30617.4 | 1 | Trypanosoma brucei brucei | ||
21 | DU | mS68 | polymer | 228 | 26472.8 | 1 | Trypanosoma brucei brucei | ||
22 | DZ | mS73 | polymer | 94 | 11360.9 | 1 | UniProt (Q587C4) In PDB | Trypanosoma brucei brucei | |
23 | F2 | mt-SAF2 (KRIPP2) | polymer | 1024 | 116189.5 | 1 | Trypanosoma brucei brucei | ||
24 | F3 | mt-SAF3 | polymer | 966 | 106621.7 | 1 | UniProt (Q38E61) In PDB | Trypanosoma brucei brucei | |
25 | F5 | mt-SAF5 | polymer | 754 | 86949.4 | 1 | Trypanosoma brucei brucei | ||
26 | F6 | mt-SAF6 | polymer | 676 | 76781.4 | 1 | UniProt (Q38FQ8) Pfam (PF14687) In PDB | Trypanosoma brucei brucei | |
27 | F7 | mt-SAF7 (KRIPP10) | polymer | 679 | 76675.2 | 1 | UniProt (Q57UW6) In PDB | Trypanosoma brucei brucei | |
28 | F8 | mt-SAF8 | polymer | 726 | 76725.2 | 1 | Trypanosoma brucei brucei | ||
29 | F9 | mt-SAF9 | polymer | 608 | 69781.8 | 1 | Trypanosoma brucei brucei | ||
30 | FA | mt-SAF10 | polymer | 642 | 69306.8 | 1 | UniProt (Q386U1) In PDB | Trypanosoma brucei brucei | |
31 | FB, FC | mt-SAF11 | polymer | 579 | 64917.0 | 2 | Trypanosoma brucei brucei | ||
32 | FE | mt-SAF13 | polymer | 553 | 63690.7 | 1 | Trypanosoma brucei brucei | ||
33 | FJ | mt-SAF18 | polymer | 362 | 42508.0 | 1 | Trypanosoma brucei brucei | ||
34 | FM, FN | mt-SAF21 | polymer | 370 | 39610.8 | 2 | Trypanosoma brucei brucei | ||
35 | FO | mt-SAF22 (KRIPP17) | polymer | 334 | 39132.6 | 1 | UniProt (Q389F9) In PDB | Trypanosoma brucei brucei | |
36 | FP | mt-SAF23 | polymer | 349 | 38240.2 | 1 | Trypanosoma brucei brucei | ||
37 | FQ, FR, FS, FT, FU | mt-SAF24 | polymer | 307 | 34648.0 | 5 | UniProt (Q387P8) Pfam (PF02214) In PDB | Trypanosoma brucei brucei | |
38 | FW | mt-SAF26 | polymer | 263 | 30538.6 | 1 | UniProt (Q38FI3) Pfam (PF01451) In PDB | Trypanosoma brucei brucei | |
39 | FX | mt-SAF27 | polymer | 239 | 26936.7 | 1 | UniProt (Q57YK5) Pfam (PF13812) In PDB | Trypanosoma brucei brucei | |
40 | FY | mt-SAF28 | polymer | 188 | 21468.7 | 1 | Trypanosoma brucei brucei | ||
41 | FZ | mt-SAF29 | polymer | 178 | 20048.5 | 1 | Trypanosoma brucei brucei | ||
42 | Fa | mt-SAF30 | polymer | 171 | 19659.8 | 1 | UniProt (Q57VU7) In PDB | Trypanosoma brucei brucei | |
43 | Fb | mt-SAF31 | polymer | 151 | 17673.5 | 1 | UniProt (Q581U4) In PDB | Trypanosoma brucei brucei | |
44 | Fc | mt-SAF32 | polymer | 148 | 16550.8 | 1 | UniProt (Q57WW9) Pfam (PF00550) In PDB | Trypanosoma brucei brucei | |
45 | Fd | mt-SAF33 | polymer | 143 | 16291.1 | 1 | UniProt (Q581T4) Pfam (PF14311) In PDB | Trypanosoma brucei brucei | |
46 | UA | UNK-A | polymer | 21 | 1805.2 | 1 | Trypanosoma brucei brucei | ||
47 | UB | UNK-B | polymer | 27 | 2315.8 | 1 | Trypanosoma brucei brucei | ||
48 | UC | UNK-C | polymer | 10 | 869.1 | 1 | Trypanosoma brucei brucei | ||
49 | UD, UM, UQ | UNK-D, UNK-M, UNK-Q | polymer | 9 | 784.0 | 3 | Trypanosoma brucei brucei | ||
50 | UE, UP | UNK-E, UNK-P | polymer | 45 | 3847.7 | 2 | Trypanosoma brucei brucei | ||
51 | UF | UNK-F | polymer | 11 | 954.2 | 1 | Trypanosoma brucei brucei | ||
52 | UG | UNK-G | polymer | 17 | 1464.8 | 1 | Trypanosoma brucei brucei | ||
53 | UH | UNK-H | polymer | 5 | 443.5 | 1 | Trypanosoma brucei brucei | ||
54 | UI, UN | UNK-I, UNK-M | polymer | 8 | 698.9 | 2 | Trypanosoma brucei brucei | ||
55 | UJ | UNK-J | polymer | 16 | 1379.7 | 1 | Trypanosoma brucei brucei | ||
56 | UL | UNK-L | polymer | 22 | 1890.3 | 1 | Trypanosoma brucei brucei | ||
57 | UO | UNK-O | polymer | 30 | 2571.2 | 1 | Trypanosoma brucei brucei | ||
58 | UU | UNK-U | polymer | 24 | 2060.5 | 1 | Trypanosoma brucei brucei | ||
59 | UY | UNK-I | polymer | 468 | 39847.1 | 1 | Trypanosoma brucei brucei | ||
60 | CA | 9S rRNA | polymer | 474 | 151505.6 | 1 | Trypanosoma brucei brucei | ||
61 | F1 | mt-SAF1 (RSM22) | polymer | 1041 | 119799.4 | 1 | UniProt (Q385R2) Pfam (PF09243) In PDB | Trypanosoma brucei brucei | |
62 | FF | mt-SAF14 | polymer | 474 | 53320.8 | 1 | UniProt (Q57W60) Pfam (PF01795) In PDB | Trypanosoma brucei brucei | |
63 | CAB, FPA, FWB, CAA | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
64 | FWA | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
65 | FcA | S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE | non-polymer | 496.6 | 1 | Chemie (PM8) | |||
66 | FdA | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
CK: 1 - 326 (UniProt: Q389T7)
F3: 1 - 966 (UniProt: Q38E61)
F6: 1 - 676 (UniProt: Q38FQ8)
F7: 1 - 679 (UniProt: Q57UW6)
FA: 1 - 642 (UniProt: Q386U1)
Fa: 1 - 171 (UniProt: Q57VU7)
F1: 1 - 1041 (UniProt: Q385R2)
FF: 1 - 474 (UniProt: Q57W60)
PDB | External Database | Details |
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Arg 3 | Gln 3 | conflict |
PDB | External Database | Details |
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Thr 44 | Ala 44 | conflict |
Val 190 | Ile 190 | conflict |
Ala 303 | Ser 303 | conflict |
Asp 418 | Asn 418 | conflict |
PDB | External Database | Details |
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Arg 285 | His 285 | conflict |
Ile 291 | Thr 291 | conflict |
Ala 602 | Val 602 | conflict |
Cys 676 | Phe 676 | conflict |
PDB | External Database | Details |
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Ile 36 | Thr 36 | conflict |
Glu 470 | Lys 470 | conflict |
Val 474 | Ala 474 | conflict |
PDB | External Database | Details |
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Ala 173 | Thr 173 | conflict |
Tyr 352 | His 352 | conflict |
PDB | External Database | Details |
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Ala 73 | Val 73 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 707 | Gly 707 | conflict |
Thr 973 | Met 973 | conflict |
PDB | External Database | Details |
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Ala 70 | Pro 70 | conflict |
Phe 179 | Leu 179 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 72 |
Total formula weight | 2643122.4 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 754.2 | |
All* | Total formula weight | 2643876.6 |