6SGA
Body domain of the mt-SSU assemblosome from Trypanosoma brucei
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (CE) | uS5m | polymer | 435 | 50147.4 | 1 | Trypanosoma brucei brucei | ||
| 2 | B (CF) | bS6m | polymer | 160 | 18861.5 | 1 | UniProt (Q38BW5) | Trypanosoma brucei brucei | |
| 3 | C (CH) | uS8m | polymer | 282 | 32766.5 | 1 | Trypanosoma brucei brucei | ||
| 4 | D (CK) | uS11m | polymer | 326 | 37954.0 | 1 | UniProt (Q389T7) | Trypanosoma brucei brucei | |
| 5 | E (CO) | uS15m | polymer | 429 | 50401.2 | 1 | UniProt (Q4GZ99) | Trypanosoma brucei brucei | |
| 6 | F (CP) | bS16m | polymer | 188 | 22077.8 | 1 | UniProt (Q384N9) | Trypanosoma brucei brucei | |
| 7 | G (CQ) | uS17m | polymer | 336 | 39012.4 | 1 | Trypanosoma brucei brucei | ||
| 8 | H (CR) | bS18m | polymer | 320 | 36988.7 | 1 | Trypanosoma brucei brucei | ||
| 9 | I (Ca) | mS22 | polymer | 602 | 73064.1 | 1 | UniProt (Q38DR3) | Trypanosoma brucei brucei | |
| 10 | J (Cb) | mS23 | polymer | 311 | 35358.8 | 1 | Trypanosoma brucei brucei | ||
| 11 | K (Cd) | mS26 | polymer | 440 | 51136.7 | 1 | UniProt (Q38DK6) | Trypanosoma brucei brucei | |
| 12 | L (Cj) | mS34 | polymer | 257 | 28728.2 | 1 | UniProt (Q57UK0) | Trypanosoma brucei brucei | |
| 13 | M (Cn) | mS38 | polymer | 250 | 28240.6 | 1 | UniProt (Q57VQ9) | Trypanosoma brucei brucei | |
| 14 | N (Cp) | mS41 | polymer | 187 | 22421.5 | 1 | UniProt (Q389L3) | Trypanosoma brucei brucei | |
| 15 | O (DD) | mS51 (KRIPP1) | polymer | 812 | 95081.0 | 1 | Trypanosoma brucei brucei | ||
| 16 | P (DI) | mS56 | polymer | 407 | 47306.8 | 1 | Trypanosoma brucei brucei | ||
| 17 | Q (DL) | mS59 | polymer | 307 | 35395.7 | 1 | Trypanosoma brucei brucei | ||
| 18 | R (DO) | mS62 (KRIPP14) | polymer | 282 | 32068.1 | 1 | UniProt (Q383D1) | Trypanosoma brucei brucei | |
| 19 | S (DP) | mS63 (KRIPP16) | polymer | 274 | 31922.2 | 1 | Trypanosoma brucei brucei | ||
| 20 | T (DR) | mS65 | polymer | 270 | 30617.4 | 1 | Trypanosoma brucei brucei | ||
| 21 | U (DU) | mS68 | polymer | 228 | 26472.8 | 1 | Trypanosoma brucei brucei | ||
| 22 | V (DZ) | mS73 | polymer | 94 | 11360.9 | 1 | UniProt (Q587C4) | Trypanosoma brucei brucei | |
| 23 | W (F2) | mt-SAF2 (KRIPP2) | polymer | 1024 | 116189.5 | 1 | Trypanosoma brucei brucei | ||
| 24 | X (F3) | mt-SAF3 | polymer | 966 | 106621.7 | 1 | UniProt (Q38E61) | Trypanosoma brucei brucei | |
| 25 | Y (F5) | mt-SAF5 | polymer | 754 | 86949.4 | 1 | Trypanosoma brucei brucei | ||
| 26 | Z (F6) | mt-SAF6 | polymer | 676 | 76781.4 | 1 | UniProt (Q38FQ8) Pfam (PF14687) | Trypanosoma brucei brucei | |
| 27 | AA (F7) | mt-SAF7 (KRIPP10) | polymer | 679 | 76675.2 | 1 | UniProt (Q57UW6) | Trypanosoma brucei brucei | |
| 28 | BA (F8) | mt-SAF8 | polymer | 726 | 76725.2 | 1 | Trypanosoma brucei brucei | ||
| 29 | CA (F9) | mt-SAF9 | polymer | 608 | 69781.8 | 1 | Trypanosoma brucei brucei | ||
| 30 | DA (FA) | mt-SAF10 | polymer | 642 | 69306.8 | 1 | UniProt (Q386U1) | Trypanosoma brucei brucei | |
| 31 | EA, FA (FB, FC) | mt-SAF11 | polymer | 579 | 64917.0 | 2 | Trypanosoma brucei brucei | ||
| 32 | GA (FE) | mt-SAF13 | polymer | 553 | 63690.7 | 1 | Trypanosoma brucei brucei | ||
| 33 | HA (FJ) | mt-SAF18 | polymer | 362 | 42508.0 | 1 | Trypanosoma brucei brucei | ||
| 34 | IA, JA (FM, FN) | mt-SAF21 | polymer | 370 | 39610.8 | 2 | Trypanosoma brucei brucei | ||
| 35 | KA (FO) | mt-SAF22 (KRIPP17) | polymer | 334 | 39132.6 | 1 | UniProt (Q389F9) | Trypanosoma brucei brucei | |
| 36 | LA (FP) | mt-SAF23 | polymer | 349 | 38240.2 | 1 | Trypanosoma brucei brucei | ||
| 37 | MA, NA, OA, PA, QA (FQ, FR, FS, FT, FU) | mt-SAF24 | polymer | 307 | 34648.0 | 5 | UniProt (Q387P8) Pfam (PF02214) | Trypanosoma brucei brucei | |
| 38 | RA (FW) | mt-SAF26 | polymer | 263 | 30538.6 | 1 | UniProt (Q38FI3) Pfam (PF01451) | Trypanosoma brucei brucei | |
| 39 | SA (FX) | mt-SAF27 | polymer | 239 | 26936.7 | 1 | UniProt (Q57YK5) Pfam (PF13812) | Trypanosoma brucei brucei | |
| 40 | TA (FY) | mt-SAF28 | polymer | 188 | 21468.7 | 1 | Trypanosoma brucei brucei | ||
| 41 | UA (FZ) | mt-SAF29 | polymer | 178 | 20048.5 | 1 | Trypanosoma brucei brucei | ||
| 42 | VA (Fa) | mt-SAF30 | polymer | 171 | 19659.8 | 1 | UniProt (Q57VU7) | Trypanosoma brucei brucei | |
| 43 | WA (Fb) | mt-SAF31 | polymer | 151 | 17673.5 | 1 | UniProt (Q581U4) | Trypanosoma brucei brucei | |
| 44 | XA (Fc) | mt-SAF32 | polymer | 148 | 16550.8 | 1 | UniProt (Q57WW9) Pfam (PF00550) | Trypanosoma brucei brucei | |
| 45 | YA (Fd) | mt-SAF33 | polymer | 143 | 16291.1 | 1 | UniProt (Q581T4) Pfam (PF14311) | Trypanosoma brucei brucei | |
| 46 | ZA (UA) | UNK-A | polymer | 21 | 1805.2 | 1 | Trypanosoma brucei brucei | ||
| 47 | AB (UB) | UNK-B | polymer | 27 | 2315.8 | 1 | Trypanosoma brucei brucei | ||
| 48 | BB (UC) | UNK-C | polymer | 10 | 869.1 | 1 | Trypanosoma brucei brucei | ||
| 49 | CB, KB, OB (UD, UM, UQ) | UNK-D, UNK-M, UNK-Q | polymer | 9 | 784.0 | 3 | Trypanosoma brucei brucei | ||
| 50 | DB, NB (UE, UP) | UNK-E, UNK-P | polymer | 45 | 3847.7 | 2 | Trypanosoma brucei brucei | ||
| 51 | EB (UF) | UNK-F | polymer | 11 | 954.2 | 1 | Trypanosoma brucei brucei | ||
| 52 | FB (UG) | UNK-G | polymer | 17 | 1464.8 | 1 | Trypanosoma brucei brucei | ||
| 53 | GB (UH) | UNK-H | polymer | 5 | 443.5 | 1 | Trypanosoma brucei brucei | ||
| 54 | HB, LB (UI, UN) | UNK-I, UNK-M | polymer | 8 | 698.9 | 2 | Trypanosoma brucei brucei | ||
| 55 | IB (UJ) | UNK-J | polymer | 16 | 1379.7 | 1 | Trypanosoma brucei brucei | ||
| 56 | JB (UL) | UNK-L | polymer | 22 | 1890.3 | 1 | Trypanosoma brucei brucei | ||
| 57 | MB (UO) | UNK-O | polymer | 30 | 2571.2 | 1 | Trypanosoma brucei brucei | ||
| 58 | PB (UU) | UNK-U | polymer | 24 | 2060.5 | 1 | Trypanosoma brucei brucei | ||
| 59 | QB (UY) | UNK-I | polymer | 468 | 39847.1 | 1 | Trypanosoma brucei brucei | ||
| 60 | RB (CA) | 9S rRNA | polymer | 474 | 151505.6 | 1 | Trypanosoma brucei brucei | ||
| 61 | SB (F1) | mt-SAF1 (RSM22) | polymer | 1041 | 119799.4 | 1 | UniProt (Q385R2) Pfam (PF09243) | Trypanosoma brucei brucei | |
| 62 | TB (FF) | mt-SAF14 | polymer | 474 | 53320.8 | 1 | UniProt (Q57W60) Pfam (PF01795) | Trypanosoma brucei brucei | |
| 63 | AC, UB, WB, ZB (CAB, FPA, FWB, CAA) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 64 | VB (FWA) | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
| 65 | XB (FcA) | S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE | non-polymer | 496.6 | 1 | Chemie (PM8) | |||
| 66 | YB (FdA) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
CK: 1 - 326 (UniProt: Q389T7)
F3: 1 - 966 (UniProt: Q38E61)
F6: 1 - 676 (UniProt: Q38FQ8)
F7: 1 - 679 (UniProt: Q57UW6)
FA: 1 - 642 (UniProt: Q386U1)
Fa: 1 - 171 (UniProt: Q57VU7)
F1: 1 - 1041 (UniProt: Q385R2)
FF: 1 - 474 (UniProt: Q57W60)
| PDB | External Database | Details |
|---|---|---|
| Arg 3 | Gln 3 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Thr 44 | Ala 44 | conflict |
| Val 190 | Ile 190 | conflict |
| Ala 303 | Ser 303 | conflict |
| Asp 418 | Asn 418 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 285 | His 285 | conflict |
| Ile 291 | Thr 291 | conflict |
| Ala 602 | Val 602 | conflict |
| Cys 676 | Phe 676 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ile 36 | Thr 36 | conflict |
| Glu 470 | Lys 470 | conflict |
| Val 474 | Ala 474 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 173 | Thr 173 | conflict |
| Tyr 352 | His 352 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 73 | Val 73 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ser 707 | Gly 707 | conflict |
| Thr 973 | Met 973 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 70 | Pro 70 | conflict |
| Phe 179 | Leu 179 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 72 |
| Total formula weight | 2643122.4 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 754.2 | |
| All* | Total formula weight | 2643876.6 |
